3,755 research outputs found

    Fermentation: Metabolism, Kinetic Models, and Bioprocessing

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    Biochemical and metabolic interpretation of microbial growth is an important topic in bioreactor design. We intend to address valuable information about the relation of critical operation variables and the simulation of bioprocesses with unstructured and structured kinetic models. Process parameters such as nutrient supply, pH, dissolved oxygen, and metabolic end-products directly impact the physiology and metabolism of microorganisms. Changes in the membrane as well as cell viability are of interest since protein expression and maturation in prokaryota are directly related to membrane integrity. This chapter intends to deliver an insight of different alternatives in kinetic modeling

    Machine learning in bioprocess development: From promise to practice

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    Fostered by novel analytical techniques, digitalization and automation, modern bioprocess development provides high amounts of heterogeneous experimental data, containing valuable process information. In this context, data-driven methods like machine learning (ML) approaches have a high potential to rationally explore large design spaces while exploiting experimental facilities most efficiently. The aim of this review is to demonstrate how ML methods have been applied so far in bioprocess development, especially in strain engineering and selection, bioprocess optimization, scale-up, monitoring and control of bioprocesses. For each topic, we will highlight successful application cases, current challenges and point out domains that can potentially benefit from technology transfer and further progress in the field of ML

    Layered Modeling and Simulation of Complex Biotechnological Processes - Optimizing Rhamnolipid Production by Pseudomonas aeruginosa during Cultivation in a Bioreactor

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    In this thesis, a model for the regulation of rhamnolipid production and data obtained from metabolic balancing were combined with a process model on a bioreactor scale. The model was used to derive an optimized process control stategy for enhanced product formation. This thesis provides a missing piece in a puzzle for knowledge-based strategies for enhanced rhamnolipid formation

    Bioprocess Monitoring and Control

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    Process monitoring and control are fundamental to all processes; this holds especially for bioprocesses, due to their complex nature. Usually, bioprocesses deal with living cells, which have their own regulatory systems. It helps to adjust the cell to its environmental condition. This must not be the optimal condition that the cell needs to produce whatever is desired. Therefore, a close monitoring of the cell and its environment is essential to provide optimal conditions for production. Without measurement, no information of the current process state is obtained. In this book, methods and techniques are provided for the monitoring and control of bioprocesses. From new developments for sensors, the application of spectroscopy and modelling approaches, the estimation and observer implementation for ethanol production and the development and scale-up of various bioprocesses and their closed loop control information are presented. The processes discussed here are very diverse. The major applications are cultivation processes, where microorganisms were grown, but also an incubation process of bird’s eggs, as well as an indoor climate control for humans, will be discussed. Altogether, in 12 chapters, nine original research papers and three reviews are presented

    The role of artificial intelligence-driven soft sensors in advanced sustainable process industries: a critical review

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    With the predicted depletion of natural resources and alarming environmental issues, sustainable development has become a popular as well as a much-needed concept in modern process industries. Hence, manufacturers are quite keen on adopting novel process monitoring techniques to enhance product quality and process efficiency while minimizing possible adverse environmental impacts. Hardware sensors are employed in process industries to aid process monitoring and control, but they are associated with many limitations such as disturbances to the process flow, measurement delays, frequent need for maintenance, and high capital costs. As a result, soft sensors have become an attractive alternative for predicting quality-related parameters that are ‘hard-to-measure’ using hardware sensors. Due to their promising features over hardware counterparts, they have been employed across different process industries. This article attempts to explore the state-of-the-art artificial intelligence (Al)-driven soft sensors designed for process industries and their role in achieving the goal of sustainable development. First, a general introduction is given to soft sensors, their applications in different process industries, and their significance in achieving sustainable development goals. AI-based soft sensing algorithms are then introduced. Next, a discussion on how AI-driven soft sensors contribute toward different sustainable manufacturing strategies of process industries is provided. This is followed by a critical review of the most recent state-of-the-art AI-based soft sensors reported in the literature. Here, the use of powerful AI-based algorithms for addressing the limitations of traditional algorithms, that restrict the soft sensor performance is discussed. Finally, the challenges and limitations associated with the current soft sensor design, application, and maintenance aspects are discussed with possible future directions for designing more intelligent and smart soft sensing technologies to cater the future industrial needs

    Towards a comprehensive modeling framework for studying glucose repression in yeast

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    The yeast Saccharomyces cerevisiae is an important model organism for human health and for industry applications as a cell factory. For both purposes, it has been an important organism for studying glucose repression. Glucose sensing and signaling is a complex biological system, where the SNF1 pathway is the main pathway responsible for glucose repression. However, it is highly interconnected with the cAMP-PKA, Snf3-Rgt2 and TOR pathways. To handle the complexity, mathematical modeling has successfully aided in elucidating the structure, mechanism, and dynamics of the pathway. In this thesis, I aim to elucidate what the effect of the interconnection of glucose repression with sensory and metabolic pathways in yeast is, specifically, how crosstalk influences the signaling cascade; what the main effects of nutrient signaling on the metabolism are and how those are affected by intrinsic stress, such as damage accumulation. Here, I have addressed these questions by developing new frameworks for mathematical modeling. A vector based method for Boolean representation of complex signaling events is presented. The method reduces the amount of necessary nodes and eases the interpretation of the Boolean states by separating different events that could alter the activity of a protein. This method was used to study how crosstalk influences the signaling cascade.To be able to represent a diverse biological network using methods suitable for respective pathways, we also developed two hybrid models. The first is demonstrating a framework to connect signaling pathways with metabolic networks, enabling the study of long-term signaling effects on the metabolism. The second hybrid model is demonstrating a framework to connect models of signaling and metabolism to growth and damage accumulation, enabling the study of how the long-term signaling effects on the metabolism influence the lifespan. This thesis represents a step towards comprehensive models of glucose repression. In addition, the methods and frameworks in this thesis can be applied and extended to other signaling pathways

    Modeling Approaches for Describing Microbial Population Heterogeneity

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    Using wireless sensors and networks program for chemical particle propagation mapping and chemical source localization

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    Chemical source localization is a challenge for most of researchers. It has extensive applications, such as anti-terrorist military, Gas and oil industry, and environment engineering. This dissertation used wireless sensor and sensor networks to get chemical particle propagation mapping and chemical source localization. First, the chemical particle propagation mapping is built using interpolation and extrapolation methods. The interpolation method get the chemical particle path through the sensors, and the extrapolation method get the chemical particle beyond the sensors. Both of them compose of the mapping in the whole considered area. Second, the algorithm of sensor fusion is proposed. It smooths the chemical particle paths through integration of more sensors\u27 value and updating the parameters. The updated parameters are associated with including sensor fusion among chemical sensors and wind sensors at same positions and sensor fusion among sensors at different positions. This algorithm improves the accuracy and efficiency of chemical particle mapping. Last, the reasoning system is implemented aiming to detect the chemical source in the considered region where the chemical particle propagation mapping has been finished. This control scheme dynamically analyzes the data from the sensors and guide us to find the goal. In this dissertation, the novel algorithm of modelling chemical propagation is programmed using Matlab. Comparing the results from computational fluid dynamics (CFD) software COMSOL, this algorithm have the same level of accuracy. However, it saves more computational times and memories. The simulation and experiment of detecting chemical source in an indoor environment and outdoor environment are finished in this dissertation --Abstract, page iii

    Development of monitoring and control systems for biotechnological processes

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    The field of biotechnology represents an important research area that has gained increasing success in recent times. Characterized by the involvement of biological organisms in manufacturing processes, its areas of application are broad and include the pharmaceuticals, agri-food, energy, and even waste treatment. The implication of living microorganisms represents the common element in all bioprocesses. Cell cultivations is undoubtedly the key step that requires maintaining environmental conditions in precise and defined ranges, having a significant impact on the process yield and thus on the desired product quality. The apparatus in which this process occurs is the bioreactor. Unfortunately, monitoring and controlling these processes can be a challenging task because of the complexity of the cell growth phenomenon and the limited number of variables can be monitored in real-time. The thesis presented here focuses on the monitoring and control of biotechnological processes, more specifically in the production of bioethanol by fermentation of sugars using yeasts. The study conducted addresses several issues related to the monitoring and control of the bioreactor, in which the fermentation takes place. First, the topic concerning the lack of proper sensors capable of providing online measurements of key variables (biomass, substrate, product) is investigated. For this purpose, nonlinear estimation techniques are analyzed to reconstruct unmeasurable states. In particular, the geometric observer approach is applied to select the best estimation structure and then a comparison with the extended Kalman filter is reported. Both estimators proposed demonstrate good estimation capabilities as input model parameters vary. Guaranteeing the achievement of the desired ethanol composition is the main goal of bioreactor control. To this end, different control strategies, evaluated for three different scenarios, are analzyed. The results show that the MIMO system, together with an estimator for ethanol composition, ensure the compliance with product quality. After analyzing these difficulties through numeric simulations, this research work shifts to testing a specific biotechnological process such as manufacturing bioethanol from brewery’s spent grain (BSG) as renewable waste biomass. Both acid pre-treatment, which is necessary to release sugars, and fermentation are optimized. Results show that a glucose yield of 18.12 per 100 g of dried biomass is obtained when the pre-treatment step is performed under optimized conditions (0.37 M H2SO4, 10% S-L ratio). Regarding the fermentation, T=25°C, pH=4.5, and inoculum volume equal to 12.25% v/v are selected as the best condition, at which an ethanol yield of 82.67% evaluated with respect to theoretical one is obtained. As a final step, the use of Raman spectroscopy combined with chemometric techniques such as Partial Least Square (PLS) analysis is evaluated to develop an online sensor for fermentation process monitoring. The results show that the biomass type involved significantly affects the acquired spectra, making them noisy and difficult to interpret. This represents a nontrivial limitation of the applied methodology, for which more experimental data and more robust statistical techniques could be helpful
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