Assay Type Detection Using Advanced Machine Learning Algorithms

The colourimetric analysis has been used in diversified fields for years. This paper provides a unique overview of colourimetric tests from the perspective of computer vision by describing different aspects of a colourimetric test in the context of image processing, followed by an investigation into the development of a colorimetric assay type detection system using advanced machine learning algorithms. To the best of our knowledge, this is the first attempt to define colourimetric assay types from the eyes of a machine and perform any colorimetric test using deep learning. This investigation utilizes the state-of-the-art pre-trained models of Convolutional Neural Network (CNN) to perform the assay type detection of an enzyme-linked immunosorbent assay (ELISA) and lateral flow assay (LFA). The ELISA dataset contains images of both positive and negative samples, prepared for the plasmonic ELISA based TB-antigen specific antibody detection. The LFA dataset contains images of the universal pH indicator paper of eight pH levels. It is noted that the pre-trained models offered 100% accurate visual recognition for the assay type detection. Such detection can assist novice users to initiate a colorimetric test using his/her personal digital devices. The assay type detection can also aid in calibrating an image-based colorimetric classification

Developments in Transduction, Connectivity and AI/Machine Learning for Point-of-Care Testing

We review some emerging trends in transduction, connectivity and data analytics for Point-of-Care Testing (POCT) of infectious and non-communicable diseases. The patient need for POCT is described along with developments in portable diagnostics, specifically in respect of Lab-on-chip and microfluidic systems. We describe some novel electrochemical and photonic systems and the use of mobile phones in terms of hardware components and device connectivity for POCT. Developments in data analytics that are applicable for POCT are described with an overview of data structures and recent AI/Machine learning trends. The most important methodologies of machine learning, including deep learning methods, are summarised. The potential value of trends within POCT systems for clinical diagnostics within Lower Middle Income Countries (LMICs) and the Least Developed Countries (LDCs) are highlighted

iMAGING: a novel automated system for malaria diagnosis by using artificial intelligence tools and a universal low-cost robotized microscope

Artificial intelligence; Malaria diagnosis; Robotized microscopeInteligencia artificial; Diagnóstico de malaria; Microscopio robotizadoIntel·ligència artificial; Diagnòstic de malària; Microscopi robotitzatIntroduction: Malaria is one of the most prevalent infectious diseases in sub-Saharan Africa, with 247 million cases reported worldwide in 2021 according to the World Health Organization. Optical microscopy remains the gold standard technique for malaria diagnosis, however, it requires expertise, is time-consuming and difficult to reproduce. Therefore, new diagnostic techniques based on digital image analysis using artificial intelligence tools can improve diagnosis and help automate it. Methods: In this study, a dataset of 2571 labeled thick blood smear images were created. YOLOv5x, Faster R-CNN, SSD, and RetinaNet object detection neural networks were trained on the same dataset to evaluate their performance in Plasmodium parasite detection. Attention modules were applied and compared with YOLOv5x results. To automate the entire diagnostic process, a prototype of 3D-printed pieces was designed for the robotization of conventional optical microscopy, capable of auto-focusing the sample and tracking the entire slide. Results: Comparative analysis yielded a performance for YOLOv5x on a test set of 92.10% precision, 93.50% recall, 92.79% F-score, and 94.40% mAP0.5 for leukocyte, early and mature Plasmodium trophozoites overall detection. F-score values of each category were 99.0% for leukocytes, 88.6% for early trophozoites and 87.3% for mature trophozoites detection. Attention modules performance show non-significant statistical differences when compared to YOLOv5x original trained model. The predictive models were integrated into a smartphone-computer application for the purpose of image-based diagnostics in the laboratory. The system can perform a fully automated diagnosis by the auto-focus and X-Y movements of the robotized microscope, the CNN models trained for digital image analysis, and the smartphone device. The new prototype would determine whether a Giemsa-stained thick blood smear sample is positive/negative for Plasmodium infection and its parasite levels. The whole system was integrated into the iMAGING smartphone application. Conclusion: The coalescence of the fully-automated system via auto-focus and slide movements and the autonomous detection of Plasmodium parasites in digital images with a smartphone software and AI algorithms confers the prototype the optimal features to join the global effort against malaria, neglected tropical diseases and other infectious diseases.The project is funded by the Microbiology Department of Vall d’Hebron University Hospital, the Cooperation Centre of the Universitat Politècnica de Catalunya (CCD-UPC), and the Probitas Foundation

Mobile Diagnosis 2.0

Mobile sensing and diagnostic capabilities are becoming extremely important for a wide range of emerging applications and fields spanning mobile health, telemedicine, point-of-care diagnostics, global health, field medicine, democratization of sensing and diagnostic tools, environmental monitoring, and citizen science, among many others. The importance of low-cost mobile technologies has been underlined during this current COVID-19 pandemic, particularly for applications such as the detection of pathogens, including bacteria and viruses, as well as for prediction and management of different diseases and disorders. This book focuses on some of these application areas and provides a timely summary of cutting-edge results and emerging technologies in these interdisciplinary fields

Teledermoscopy in the Diagnosis of Melanocytic and Non-Melanocytic Skin Lesions: NurugoTM Derma Smartphone Microscope as a Possible New Tool in Daily Clinical Practice

Background: Due to the COVID-19 pandemic, teledermoscopy has been increasingly used in the remote diagnosis of skin cancers. In a study conducted in 2020, we demonstrated a potential role of an inexpensive device (NurugoTM Derma) as a first triage to select the skin lesions that require a face-to-face consultation with dermatologists. Herein, we report the results of a novel study that aimed to better investigate the performance of NurugoTM. Objectives: (i) verify whether the NurugoTM can be a communication tool between the general practitioner (GP) and dermatologist in the first assessment of skin lesions, (ii) analyze the degree of diagnostic–therapeutic agreement between dermatologists, (iii) estimate the number of potentially serious diagnostic errors. Methods: One hundred and forty-four images of skin lesions were collected at the Dermatology Outpatient Clinic in Novara using a conventional dermatoscope (instrument F), the NurugoTM (instrument N), and the latter with the interposition of a laboratory slide (instrument V). The images were evaluated in-blind by four dermatologists, and each was asked to make a diagnosis and to specify a possible treatment. Results: Our data show that F gave higher agreement values for all dermatologists, concerning the real clinical diagnosis. Nevertheless, a medium/moderate agreement value was obtained also for N and V instruments and that can be considered encouraging and indicate that all examined tools can potentially be used for the first screening of skin lesions. The total amount of misclassified lesions was limited (especially with the V tool), with up to nine malignant lesions wrongly classified as benign. Conclusions: NurugoTM, with adequate training, can be used to build a specific support network between GP and dermatologist or between dermatologists. Furthermore, its use could be extended to the diagnosis and follow-up of other skin diseases, especially for frail patients in emergencies, such as the current pandemic context

An intelligent mobile-enabled expert system for tuberculosis disease diagnosis in real time

This paper presents an investigation into the development of an intelligent mobile-enabled expert system to perform an automatic detection of tuberculosis (TB) disease in real-time. One third of the global population are infected with the TB bacterium, and the prevailing diagnosis methods are either resource-intensive or time consuming. Thus, a reliable and easy–to-use diagnosis system has become essential to make the world TB free by 2030, as envisioned by the World Health Organisation. In this work, the challenges in implementing an efficient image processing platform is presented to extract the images from plasmonic ELISAs for TB antigen-specific antibodies and analyse their features. The supervised machine learning techniques are utilised to attain binary classification from eighteen lower-order colour moments. The proposed system is trained off-line, followed by testing and validation using a separate set of images in real-time. Using an ensemble classifier, Random Forest, we demonstrated 98.4% accuracy in TB antigen-specific antibody detection on the mobile platform. Unlike the existing systems, the proposed intelligent system with real time processing capabilities and data portability can provide the prediction without any opto-mechanical attachment, which will undergo a clinical test in the next phase.</p

Advances and challenges in automated malaria diagnosis using digital microscopy imaging with artificial intelligence tools: A review

Deep learning; Malaria diagnosis; Microscopic examinationAprenentatge profund; Diagnòstic de malària; Examen microscòpicAprendizaje profundo; Diagnóstico de malaria; Examen microscópicoMalaria is an infectious disease caused by parasites of the genus Plasmodium spp. It is transmitted to humans by the bite of an infected female Anopheles mosquito. It is the most common disease in resource-poor settings, with 241 million malaria cases reported in 2020 according to the World Health Organization. Optical microscopy examination of blood smears is the gold standard technique for malaria diagnosis; however, it is a time-consuming method and a well-trained microscopist is needed to perform the microbiological diagnosis. New techniques based on digital imaging analysis by deep learning and artificial intelligence methods are a challenging alternative tool for the diagnosis of infectious diseases. In particular, systems based on Convolutional Neural Networks for image detection of the malaria parasites emulate the microscopy visualization of an expert. Microscope automation provides a fast and low-cost diagnosis, requiring less supervision. Smartphones are a suitable option for microscopic diagnosis, allowing image capture and software identification of parasites. In addition, image analysis techniques could be a fast and optimal solution for the diagnosis of malaria, tuberculosis, or Neglected Tropical Diseases in endemic areas with low resources. The implementation of automated diagnosis by using smartphone applications and new digital imaging technologies in low-income areas is a challenge to achieve. Moreover, automating the movement of the microscope slide and image autofocusing of the samples by hardware implementation would systemize the procedure. These new diagnostic tools would join the global effort to fight against pandemic malaria and other infectious and poverty-related diseases.The project is funded by the Microbiology Department of Vall d’Hebron Universitary Hospital, the Cooperation Centre of the Universitat Politècnica de Catalunya (CCD-UPC) and the Probitas Foundation

Advances and challenges in automated malaria diagnosis using digital microscopy imaging with artificial intelligence tools: A review

Malaria is an infectious disease caused by parasites of the genus Plasmodium spp. It is transmitted to humans by the bite of an infected female Anopheles mosquito. It is the most common disease in resource-poor settings, with 241 illion malaria cases reported in 2020 according to the World Health Organization. Optical microscopy examination of blood smears is the gold standard technique for malaria diagnosis; however, it is a time-consuming method and a well-trained microscopist is needed to perform the microbiological diagnosis. New techniques based on digital imaging analysis by deep learning and artificial intelligence methods are a challenging alternative tool for the diagnosis of infectious diseases. In particular, systems based on Convolutional Neural Networks for image detection of the malaria parasites emulate the microscopy visualization of an expert. Microscope automation provides a fast and low-cost diagnosis, requiring less supervision. Smartphones are a suitable option for microscopic diagnosis, allowing image capture and software identification of parasites. In addition, image analysis techniques could be a fast and optimal solution for the diagnosis of malaria, tuberculosis, or Neglected Tropical Diseases in endemic areas with low resources. The implementation of automated diagnosis by using smartphone applications and new digital imaging technologies in low-income areas is a challenge to achieve. Moreover, automating the movement of the microscope slide and image autofocusing of the samples by hardware implementation would systemize the procedure. These new diagnostic tools would join the global effort to fight against pandemic malaria and other infectious and poverty-related diseases.The project is funded by the Microbiology Department of Vall d’Hebron Universitary Hospital, the Cooperation Centre of the Universitat Politècnica de Catalunya (CCD-UPC) and the Probitas FoundationPostprint (published version

Advances and challenges in automated malaria diagnosis using digital microscopy imaging with artificial intelligence tools : A review

Malaria is an infectious disease caused by parasites of the genus Plasmodium spp. It is transmitted to humans by the bite of an infected female Anopheles mosquito. It is the most common disease in resource-poor settings, with 241 million malaria cases reported in 2020 according to the World Health Organization. Optical microscopy examination of blood smears is the gold standard technique for malaria diagnosis; however, it is a time-consuming method and a well-trained microscopist is needed to perform the microbiological diagnosis. New techniques based on digital imaging analysis by deep learning and artificial intelligence methods are a challenging alternative tool for the diagnosis of infectious diseases. In particular, systems based on Convolutional Neural Networks for image detection of the malaria parasites emulate the microscopy visualization of an expert. Microscope automation provides a fast and low-cost diagnosis, requiring less supervision. Smartphones are a suitable option for microscopic diagnosis, allowing image capture and software identification of parasites. In addition, image analysis techniques could be a fast and optimal solution for the diagnosis of malaria, tuberculosis, or Neglected Tropical Diseases in endemic areas with low resources. The implementation of automated diagnosis by using smartphone applications and new digital imaging technologies in low-income areas is a challenge to achieve. Moreover, automating the movement of the microscope slide and image autofocusing of the samples by hardware implementation would systemize the procedure. These new diagnostic tools would join the global effort to fight against pandemic malaria and other infectious and poverty-related diseases