Slicing based code parallelization for minimizing inter-processor communication

One of the critical problems in distributed memory multi-core architectures is scalable parallelization that minimizes inter-processor communication. Using the concept of iteration space slicing, this paper presents a new code parallelization scheme for data-intensive applications. This scheme targets distributed memory multi-core architectures, and formulates the problem of data-computation distribution (partitioning) across parallel processors using slicing such that, starting with the partitioning of the output arrays, it iteratively determines the partitions of other arrays as well as iteration spaces of the loop nests in the application code. The goal is to minimize inter-processor data communications. Based on this iteration space slicing based formulation of the problem, we also propose a solution scheme. The proposed data-computation scheme is evaluated using six data-intensive benchmark programs. In our experimental evaluation, we also compare this scheme against three alternate data-computation distribution schemes. The results obtained are very encouraging, indicating around 10% better speedup, with 16 processors, over the next-best scheme when averaged over all benchmark codes we tested. Copyright 2009 ACM

Distributed memory compiler methods for irregular problems: Data copy reuse and runtime partitioning

Outlined here are two methods which we believe will play an important role in any distributed memory compiler able to handle sparse and unstructured problems. We describe how to link runtime partitioners to distributed memory compilers. In our scheme, programmers can implicitly specify how data and loop iterations are to be distributed between processors. This insulates users from having to deal explicitly with potentially complex algorithms that carry out work and data partitioning. We also describe a viable mechanism for tracking and reusing copies of off-processor data. In many programs, several loops access the same off-processor memory locations. As long as it can be verified that the values assigned to off-processor memory locations remain unmodified, we show that we can effectively reuse stored off-processor data. We present experimental data from a 3-D unstructured Euler solver run on iPSC/860 to demonstrate the usefulness of our methods

Mitosis based speculative multithreaded architectures

In the last decade, industry made a right-hand turn and shifted towards multi-core processor designs, also known as Chip-Multi-Processors (CMPs), in order to provide further performance improvements under a reasonable power budget, design complexity, and validation cost. Over the years, several processor vendors have come out with multi-core chips in their product lines and they have become mainstream, with the number of cores increasing in each processor generation. Multi-core processors improve the performance of applications by exploiting Thread Level Parallelism (TLP) while the Instruction Level Parallelism (ILP) exploited by each individual core is limited. These architectures are very efficient when multiple threads are available for execution. However, single-thread sections of code (single-thread applications and serial sections of parallel applications) pose important constraints on the benefits achieved by parallel execution, as pointed out by Amdahl’s law. Parallel programming, even with the help of recently proposed techniques like transactional memory, has proven to be a very challenging task. On the other hand, automatically partitioning applications into threads may be a straightforward task in regular applications, but becomes much harder for irregular programs, where compilers usually fail to discover sufficient TLP. In this scenario, two main directions have been followed in the research community to take benefit of multi-core platforms: Speculative Multithreading (SpMT) and Non-Speculative Clustered architectures. The former splits a sequential application into speculative threads, while the later partitions the instructions among the cores based on data-dependences but avoid large degree of speculation. Despite the large amount of research on both these approaches, the proposed techniques so far have shown marginal performance improvements. In this thesis we propose novel schemes to speed-up sequential or lightly threaded applications in multi-core processors that effectively address the main unresolved challenges of previous approaches. In particular, we propose a SpMT architecture, called Mitosis, that leverages a powerful software value prediction technique to manage inter-thread dependences, based on pre-computation slices (p-slices). Thanks to the accuracy and low cost of this technique, Mitosis is able to effectively parallelize applications even in the presence of frequent dependences among threads. We also propose a novel architecture, called Anaphase, that combines the best of SpMT schemes and clustered architectures. Anaphase effectively exploits ILP, TLP and Memory Level Parallelism (MLP), thanks to its unique finegrain thread decomposition algorithm that adapts to the available parallelism in the application

Mitosis based speculative multithreaded architectures

In the last decade, industry made a right-hand turn and shifted towards multi-core processor designs, also known as Chip-Multi-Processors (CMPs), in order to provide further performance improvements under a reasonable power budget, design complexity, and validation cost. Over the years, several processor vendors have come out with multi-core chips in their product lines and they have become mainstream, with the number of cores increasing in each processor generation. Multi-core processors improve the performance of applications by exploiting Thread Level Parallelism (TLP) while the Instruction Level Parallelism (ILP) exploited by each individual core is limited. These architectures are very efficient when multiple threads are available for execution. However, single-thread sections of code (single-thread applications and serial sections of parallel applications) pose important constraints on the benefits achieved by parallel execution, as pointed out by Amdahl’s law. Parallel programming, even with the help of recently proposed techniques like transactional memory, has proven to be a very challenging task. On the other hand, automatically partitioning applications into threads may be a straightforward task in regular applications, but becomes much harder for irregular programs, where compilers usually fail to discover sufficient TLP. In this scenario, two main directions have been followed in the research community to take benefit of multi-core platforms: Speculative Multithreading (SpMT) and Non-Speculative Clustered architectures. The former splits a sequential application into speculative threads, while the later partitions the instructions among the cores based on data-dependences but avoid large degree of speculation. Despite the large amount of research on both these approaches, the proposed techniques so far have shown marginal performance improvements. In this thesis we propose novel schemes to speed-up sequential or lightly threaded applications in multi-core processors that effectively address the main unresolved challenges of previous approaches. In particular, we propose a SpMT architecture, called Mitosis, that leverages a powerful software value prediction technique to manage inter-thread dependences, based on pre-computation slices (p-slices). Thanks to the accuracy and low cost of this technique, Mitosis is able to effectively parallelize applications even in the presence of frequent dependences among threads. We also propose a novel architecture, called Anaphase, that combines the best of SpMT schemes and clustered architectures. Anaphase effectively exploits ILP, TLP and Memory Level Parallelism (MLP), thanks to its unique finegrain thread decomposition algorithm that adapts to the available parallelism in the application.Postprint (published version

Compilation techniques for irregular problems on parallel machines

Massively parallel computers have ushered in the era of teraflop computing. Even though large and powerful machines are being built, they are used by only a fraction of the computing community. The fundamental reason for this situation is that parallel machines are difficult to program. Development of compilers that automatically parallelize programs will greatly increase the use of these machines.;A large class of scientific problems can be categorized as irregular computations. In this class of computation, the data access patterns are known only at runtime, creating significant difficulties for a parallelizing compiler to generate efficient parallel codes. Some compilers with very limited abilities to parallelize simple irregular computations exist, but the methods used by these compilers fail for any non-trivial applications code.;This research presents development of compiler transformation techniques that can be used to effectively parallelize an important class of irregular programs. A central aim of these transformation techniques is to generate codes that aggressively prefetch data. Program slicing methods are used as a part of the code generation process. In this approach, a program written in a data-parallel language, such as HPF, is transformed so that it can be executed on a distributed memory machine. An efficient compiler runtime support system has been developed that performs data movement and software caching

Distributed Memory Compiler Methods for Irregular Problems -- Data Copy Reuse and Runtime Partitioning

This paper outlines two methods which we believe will play an important role in any distributed memory compiler able to handle sparse and unstructured problems. We describe how to link runtime partitioners to distributed memory compilers. In our scheme, programmers can implicitly specify how data and loop iterations are to be distributed between processors. This insulates users from having to deal explicitly with potentially complex algorithms that carry out work and data partitioning. We also describe a viable mechanism for tracking and reusing copies of off-processor data. In many programs, several loops access the same off-processor memory locations. As long as it can be verified that the values assigned to off-processor memory locations remain unmodified, we show that we can effectively reuse stored off-processor data. We present experimental data from a 3-D unstructured Euler solver run on an iPSC/860 to demonstrate the usefulness of our methods

High-Performance Computing: Dos and Don’ts

Computational fluid dynamics (CFD) is the main field of computational mechanics that has historically benefited from advances in high-performance computing. High-performance computing involves several techniques to make a simulation efficient and fast, such as distributed memory parallelism, shared memory parallelism, vectorization, memory access optimizations, etc. As an introduction, we present the anatomy of supercomputers, with special emphasis on HPC aspects relevant to CFD. Then, we develop some of the HPC concepts and numerical techniques applied to the complete CFD simulation framework: from preprocess (meshing) to postprocess (visualization) through the simulation itself (assembly and iterative solvers)

A design methodology for portable software on parallel computers

This final report for research that was supported by grant number NAG-1-995 documents our progress in addressing two difficulties in parallel programming. The first difficulty is developing software that will execute quickly on a parallel computer. The second difficulty is transporting software between dissimilar parallel computers. In general, we expect that more hardware-specific information will be included in software designs for parallel computers than in designs for sequential computers. This inclusion is an instance of portability being sacrificed for high performance. New parallel computers are being introduced frequently. Trying to keep one's software on the current high performance hardware, a software developer almost continually faces yet another expensive software transportation. The problem of the proposed research is to create a design methodology that helps designers to more precisely control both portability and hardware-specific programming details. The proposed research emphasizes programming for scientific applications. We completed our study of the parallelizability of a subsystem of the NASA Earth Radiation Budget Experiment (ERBE) data processing system. This work is summarized in section two. A more detailed description is provided in Appendix A ('Programming Practices to Support Eventual Parallelism'). Mr. Chrisman, a graduate student, wrote and successfully defended a Ph.D. dissertation proposal which describes our research associated with the issues of software portability and high performance. The list of research tasks are specified in the proposal. The proposal 'A Design Methodology for Portable Software on Parallel Computers' is summarized in section three and is provided in its entirety in Appendix B. We are currently studying a proposed subsystem of the NASA Clouds and the Earth's Radiant Energy System (CERES) data processing system. This software is the proof-of-concept for the Ph.D. dissertation. We have implemented and measured the performance of a portion of this subsystem on the Intel iPSC/2 parallel computer. These results are provided in section four. Our future work is summarized in section five, our acknowledgements are stated in section six, and references for published papers associated with NAG-1-995 are provided in section seven

Numerical Relativity As A Tool For Computational Astrophysics

The astrophysics of compact objects, which requires Einstein's theory of general relativity for understanding phenomena such as black holes and neutron stars, is attracting increasing attention. In general relativity, gravity is governed by an extremely complex set of coupled, nonlinear, hyperbolic-elliptic partial differential equations. The largest parallel supercomputers are finally approaching the speed and memory required to solve the complete set of Einstein's equations for the first time since they were written over 80 years ago, allowing one to attempt full 3D simulations of such exciting events as colliding black holes and neutron stars. In this paper we review the computational effort in this direction, and discuss a new 3D multi-purpose parallel code called ``Cactus'' for general relativistic astrophysics. Directions for further work are indicated where appropriate.Comment: Review for JCA