Binary object recognition system on FPGA with bSOM

Tri-state Self Organizing Map (bSOM), which takes binary inputs and maintains tri-state weights, has been used for classification rather than clustering in this paper. The major contribution here is the demonstration of the potential use of the modified bSOM in security surveillance, as a recognition system on FPGA

Perturbation propagation in random and evolved Boolean networks

We investigate the propagation of perturbations in Boolean networks by evaluating the Derrida plot and modifications of it. We show that even small Random Boolean Networks agree well with the predictions of the annealed approximation, but non-random networks show a very different behaviour. We focus on networks that were evolved for high dynamical robustness. The most important conclusion is that the simple distinction between frozen, critical and chaotic networks is no longer useful, since such evolved networks can display properties of all three types of networks. Furthermore, we evaluate a simplified empirical network and show how its specific state space properties are reflected in the modified Derrida plots.Comment: 10 pages, 8 figure

Multi-membership gene regulation in pathway based microarray analysis

This article is available through the Brunel Open Access Publishing Fund. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.Background: Gene expression analysis has been intensively researched for more than a decade. Recently, there has been elevated interest in the integration of microarray data analysis with other types of biological knowledge in a holistic analytical approach. We propose a methodology that can be facilitated for pathway based microarray data analysis, based on the observation that a substantial proportion of genes present in biochemical pathway databases are members of a number of distinct pathways. Our methodology aims towards establishing the state of individual pathways, by identifying those truly affected by the experimental conditions based on the behaviour of such genes. For that purpose it considers all the pathways in which a gene participates and the general census of gene expression per pathway. Results: We utilise hill climbing, simulated annealing and a genetic algorithm to analyse the consistency of the produced results, through the application of fuzzy adjusted rand indexes and hamming distance. All algorithms produce highly consistent genes to pathways allocations, revealing the contribution of genes to pathway functionality, in agreement with current pathway state visualisation techniques, with the simulated annealing search proving slightly superior in terms of efficiency. Conclusions: We show that the expression values of genes, which are members of a number of biochemical pathways or modules, are the net effect of the contribution of each gene to these biochemical processes. We show that by manipulating the pathway and module contribution of such genes to follow underlying trends we can interpret microarray results centred on the behaviour of these genes.The work was sponsored by the studentship scheme of the School of Information Systems, Computing and Mathematics, Brunel Universit

A comparison of standard spell checking algorithms and a novel binary neural approach

In this paper, we propose a simple, flexible, and efficient hybrid spell checking methodology based upon phonetic matching, supervised learning, and associative matching in the AURA neural system. We integrate Hamming Distance and n-gram algorithms that have high recall for typing errors and a phonetic spell-checking algorithm in a single novel architecture. Our approach is suitable for any spell checking application though aimed toward isolated word error correction, particularly spell checking user queries in a search engine. We use a novel scoring scheme to integrate the retrieved words from each spelling approach and calculate an overall score for each matched word. From the overall scores, we can rank the possible matches. In this paper, we evaluate our approach against several benchmark spellchecking algorithms for recall accuracy. Our proposed hybrid methodology has the highest recall rate of the techniques evaluated. The method has a high recall rate and low-computational cost

Sparse neural networks with large learning diversity

Coded recurrent neural networks with three levels of sparsity are introduced. The first level is related to the size of messages, much smaller than the number of available neurons. The second one is provided by a particular coding rule, acting as a local constraint in the neural activity. The third one is a characteristic of the low final connection density of the network after the learning phase. Though the proposed network is very simple since it is based on binary neurons and binary connections, it is able to learn a large number of messages and recall them, even in presence of strong erasures. The performance of the network is assessed as a classifier and as an associative memory

On the Relationship Between the Generalized Equality Classifier and ART 2 Neural Networks

In this paper, we introduce the Generalized Equality Classifier (GEC) for use as an unsupervised clustering algorithm in categorizing analog data. GEC is based on a formal definition of inexact equality originally developed for voting in fault tolerant software applications. GEC is defined using a metric space framework. The only parameter in GEC is a scalar threshold which defines the approximate equality of two patterns. Here, we compare the characteristics of GEC to the ART2-A algorithm (Carpenter, Grossberg, and Rosen, 1991). In particular, we show that GEC with the Hamming distance performs the same optimization as ART2. Moreover, GEC has lower computational requirements than AR12 on serial machines

On the Relationship Between the Generalized Equality Classifier and ART 2 Neural Networks

In this paper, we introduce the Generalized Equality Classifier (GEC) for use as an unsupervised clustering algorithm in categorizing analog data. GEC is based on a formal definition of inexact equality originally developed for voting in fault tolerant software applications. GEC is defined using a metric space framework. The only parameter in GEC is a scalar threshold which defines the approximate equality of two patterns. Here, we compare the characteristics of GEC to the ART2-A algorithm (Carpenter, Grossberg, and Rosen, 1991). In particular, we show that GEC with the Hamming distance performs the same optimization as ART2. Moreover, GEC has lower computational requirements than AR12 on serial machines

Low-Density Parity-Check Codes for Nonergodic Block-Fading Channels

We solve the problem of designing powerful low-density parity-check (LDPC) codes with iterative decoding for the block-fading channel. We first study the case of maximum-likelihood decoding, and show that the design criterion is rather straightforward. Unfortunately, optimal constructions for maximum-likelihood decoding do not perform well under iterative decoding. To overcome this limitation, we then introduce a new family of full-diversity LDPC codes that exhibit near-outage-limit performance under iterative decoding for all block-lengths. This family competes with multiplexed parallel turbo codes suitable for nonergodic channels and recently reported in the literature.Comment: Submitted to the IEEE Transactions on Information Theor