Multi-contrast brain magnetic resonance image super-resolution using the local weight similarity

Abstract Background Low-resolution images may be acquired in magnetic resonance imaging (MRI) due to limited data acquisition time or other physical constraints, and their resolutions can be improved with super-resolution methods. Since MRI can offer images of an object with different contrasts, e.g., T1-weighted or T2-weighted, the shared information between inter-contrast images can be used to benefit super-resolution. Methods In this study, an MRI image super-resolution approach to enhance in-plane resolution is proposed by exploring the statistical information estimated from another contrast MRI image that shares similar anatomical structures. We assume some edge structures are shown both in T1-weighted and T2-weighted MRI brain images acquired of the same subject, and the proposed approach aims to recover such kind of structures to generate a high-resolution image from its low-resolution counterpart. Results The statistical information produces a local weight of image that are found to be nearly invariant to the image contrast and thus this weight can be used to transfer the shared information from one contrast to another. We analyze this property with comprehensive mathematics as well as numerical experiments. Conclusion Experimental results demonstrate that the image quality of low-resolution images can be remarkably improved with the proposed method if this weight is borrowed from a high resolution image with another contrast. Graphical Abstract Multi-contrast MRI Image Super-resolution with Contrast-invariant Regression Weight

Learning from the Artist: Theory and Practice of Example-Based Character Deformation

Movie and game production is very laborious, frequently involving hundreds of person-years for a single project. At present this work is difficult to fully automate, since it involves subjective and artistic judgments. Broadly speaking, in this thesis we explore an approach that works with the artist, accelerating their work without attempting to replace them. More specifically, we describe an “example-based” approach, in which artists provide examples of the desired shapes of the character, and the results gradually improve as more examples are given. Since a character’s skin shape deforms as the pose or expression changes, or particular problem will be termed character deformation. The overall goal of this thesis is to contribute a complete investigation and development of an example-based approach to character deformation. A central observation guiding this research is that character animation can be formulated as a high-dimensional problem, rather than the two- or three-dimensional viewpoint that is commonly adopted in computer graphics. A second observation guiding our inquiry is that statistical learning concepts are relevant. We show that example-based character animation algorithms can be informed, developed, and improved using these observations. This thesis provides definitive surveys of example-based facial and body skin deformation. This thesis analyzes the two leading families of example-based character deformation algorithms from the point of view of statistical regression. In doing so we show that a wide variety of existing tools in machine learning are applicable to our problem. We also identify several techniques that are not suitable due to the nature of the training data, and the high-dimensional nature of this regression problem. We evaluate the design decisions underlying these example-based algorithms, thus providing the groundwork for a ”best practice” choice of specific algorithms. This thesis develops several new algorithms for accelerating example-based facial animation. The first algorithm allows unspecified degrees of freedom to be automatically determined based on the style of previous, completed animations. A second algorithm allows rapid editing and control of the process of transferring motion capture of a human actor to a computer graphics character. The thesis identifies and develops several unpublished relations between the underlying mathematical techniques. Lastly, the thesis provides novel tutorial derivations of several mathematical concepts, using only the linear algebra tools that are likely to be familiar to experts in computer graphics. Portions of the research in this thesis have been published in eight papers, with two appearing in premier forums in the field

Deep Learning based data-fusion methods for remote sensing applications

In the last years, an increasing number of remote sensing sensors have been launched to orbit around the Earth, with a continuously growing production of massive data, that are useful for a large number of monitoring applications, especially for the monitoring task. Despite modern optical sensors provide rich spectral information about Earth's surface, at very high resolution, they are weather-sensitive. On the other hand, SAR images are always available also in presence of clouds and are almost weather-insensitive, as well as daynight available, but they do not provide a rich spectral information and are severely affected by speckle "noise" that make difficult the information extraction. For the above reasons it is worth and challenging to fuse data provided by different sources and/or acquired at different times, in order to leverage on their diversity and complementarity to retrieve the target information. Motivated by the success of the employment of Deep Learning methods in many image processing tasks, in this thesis it has been faced different typical remote sensing data-fusion problems by means of suitably designed Convolutional Neural Networks

A Deep Learning Framework in Selected Remote Sensing Applications

The main research topic is designing and implementing a deep learning framework applied to remote sensing. Remote sensing techniques and applications play a crucial role in observing the Earth evolution, especially nowadays, where the effects of climate change on our life is more and more evident. A considerable amount of data are daily acquired all over the Earth. Effective exploitation of this information requires the robustness, velocity and accuracy of deep learning. This emerging need inspired the choice of this topic. The conducted studies mainly focus on two European Space Agency (ESA) missions: Sentinel 1 and Sentinel 2. Images provided by the ESA Sentinel-2 mission are rapidly becoming the main source of information for the entire remote sensing community, thanks to their unprecedented combination of spatial, spectral and temporal resolution, as well as their open access policy. The increasing interest gained by these satellites in the research laboratory and applicative scenarios pushed us to utilize them in the considered framework. The combined use of Sentinel 1 and Sentinel 2 is crucial and very prominent in different contexts and different kinds of monitoring when the growing (or changing) dynamics are very rapid. Starting from this general framework, two specific research activities were identified and investigated, leading to the results presented in this dissertation. Both these studies can be placed in the context of data fusion. The first activity deals with a super-resolution framework to improve Sentinel 2 bands supplied at 20 meters up to 10 meters. Increasing the spatial resolution of these bands is of great interest in many remote sensing applications, particularly in monitoring vegetation, rivers, forests, and so on. The second topic of the deep learning framework has been applied to the multispectral Normalized Difference Vegetation Index (NDVI) extraction, and the semantic segmentation obtained fusing Sentinel 1 and S2 data. The S1 SAR data is of great importance for the quantity of information extracted in the context of monitoring wetlands, rivers and forests, and many other contexts. In both cases, the problem was addressed with deep learning techniques, and in both cases, very lean architectures were used, demonstrating that even without the availability of computing power, it is possible to obtain high-level results. The core of this framework is a Convolutional Neural Network (CNN). {CNNs have been successfully applied to many image processing problems, like super-resolution, pansharpening, classification, and others, because of several advantages such as (i) the capability to approximate complex non-linear functions, (ii) the ease of training that allows to avoid time-consuming handcraft filter design, (iii) the parallel computational architecture. Even if a large amount of "labelled" data is required for training, the CNN performances pushed me to this architectural choice.} In our S1 and S2 integration task, we have faced and overcome the problem of manually labelled data with an approach based on integrating these two different sensors. Therefore, apart from the investigation in Sentinel-1 and Sentinel-2 integration, the main contribution in both cases of these works is, in particular, the possibility of designing a CNN-based solution that can be distinguished by its lightness from a computational point of view and consequent substantial saving of time compared to more complex deep learning state-of-the-art solutions

Learning Inference Models for Computer Vision

Computer vision can be understood as the ability to perform 'inference' on image data. Breakthroughs in computer vision technology are often marked by advances in inference techniques, as even the model design is often dictated by the complexity of inference in them. This thesis proposes learning based inference schemes and demonstrates applications in computer vision. We propose techniques for inference in both generative and discriminative computer vision models. Despite their intuitive appeal, the use of generative models in vision is hampered by the difficulty of posterior inference, which is often too complex or too slow to be practical. We propose techniques for improving inference in two widely used techniques: Markov Chain Monte Carlo (MCMC) sampling and message-passing inference. Our inference strategy is to learn separate discriminative models that assist Bayesian inference in a generative model. Experiments on a range of generative vision models show that the proposed techniques accelerate the inference process and/or converge to better solutions. A main complication in the design of discriminative models is the inclusion of prior knowledge in a principled way. For better inference in discriminative models, we propose techniques that modify the original model itself, as inference is simple evaluation of the model. We concentrate on convolutional neural network (CNN) models and propose a generalization of standard spatial convolutions, which are the basic building blocks of CNN architectures, to bilateral convolutions. First, we generalize the existing use of bilateral filters and then propose new neural network architectures with learnable bilateral filters, which we call `Bilateral Neural Networks'. We show how the bilateral filtering modules can be used for modifying existing CNN architectures for better image segmentation and propose a neural network approach for temporal information propagation in videos. Experiments demonstrate the potential of the proposed bilateral networks on a wide range of vision tasks and datasets. In summary, we propose learning based techniques for better inference in several computer vision models ranging from inverse graphics to freely parameterized neural networks. In generative vision models, our inference techniques alleviate some of the crucial hurdles in Bayesian posterior inference, paving new ways for the use of model based machine learning in vision. In discriminative CNN models, the proposed filter generalizations aid in the design of new neural network architectures that can handle sparse high-dimensional data as well as provide a way for incorporating prior knowledge into CNNs