Simultaneous model-based clustering and visualization in the Fisher discriminative subspace

Clustering in high-dimensional spaces is nowadays a recurrent problem in many scientific domains but remains a difficult task from both the clustering accuracy and the result understanding points of view. This paper presents a discriminative latent mixture (DLM) model which fits the data in a latent orthonormal discriminative subspace with an intrinsic dimension lower than the dimension of the original space. By constraining model parameters within and between groups, a family of 12 parsimonious DLM models is exhibited which allows to fit onto various situations. An estimation algorithm, called the Fisher-EM algorithm, is also proposed for estimating both the mixture parameters and the discriminative subspace. Experiments on simulated and real datasets show that the proposed approach performs better than existing clustering methods while providing a useful representation of the clustered data. The method is as well applied to the clustering of mass spectrometry data

The discriminative functional mixture model for a comparative analysis of bike sharing systems

Bike sharing systems (BSSs) have become a means of sustainable intermodal transport and are now proposed in many cities worldwide. Most BSSs also provide open access to their data, particularly to real-time status reports on their bike stations. The analysis of the mass of data generated by such systems is of particular interest to BSS providers to update system structures and policies. This work was motivated by interest in analyzing and comparing several European BSSs to identify common operating patterns in BSSs and to propose practical solutions to avoid potential issues. Our approach relies on the identification of common patterns between and within systems. To this end, a model-based clustering method, called FunFEM, for time series (or more generally functional data) is developed. It is based on a functional mixture model that allows the clustering of the data in a discriminative functional subspace. This model presents the advantage in this context to be parsimonious and to allow the visualization of the clustered systems. Numerical experiments confirm the good behavior of FunFEM, particularly compared to state-of-the-art methods. The application of FunFEM to BSS data from JCDecaux and the Transport for London Initiative allows us to identify 10 general patterns, including pathological ones, and to propose practical improvement strategies based on the system comparison. The visualization of the clustered data within the discriminative subspace turns out to be particularly informative regarding the system efficiency. The proposed methodology is implemented in a package for the R software, named funFEM, which is available on the CRAN. The package also provides a subset of the data analyzed in this work.Comment: Published at http://dx.doi.org/10.1214/15-AOAS861 in the Annals of Applied Statistics (http://www.imstat.org/aoas/) by the Institute of Mathematical Statistics (http://www.imstat.org

Kernel discriminant analysis and clustering with parsimonious Gaussian process models

This work presents a family of parsimonious Gaussian process models which allow to build, from a finite sample, a model-based classifier in an infinite dimensional space. The proposed parsimonious models are obtained by constraining the eigen-decomposition of the Gaussian processes modeling each class. This allows in particular to use non-linear mapping functions which project the observations into infinite dimensional spaces. It is also demonstrated that the building of the classifier can be directly done from the observation space through a kernel function. The proposed classification method is thus able to classify data of various types such as categorical data, functional data or networks. Furthermore, it is possible to classify mixed data by combining different kernels. The methodology is as well extended to the unsupervised classification case. Experimental results on various data sets demonstrate the effectiveness of the proposed method