2,049 research outputs found
A visual analytics approach to feature discovery and subspace exploration in protein flexibility matrices
The vast amount of information generated by domain scientists makes the transi- tion from data to knowledge difficult and often impedes important discoveries. For example, the knowledge gained from protein flexibility data sets can speed advances in genetic therapies and drug discovery. However, these models generate so much data that large scale analysis by traditional methods is almost impossible. This hinders biomedical advances. Visual analytics is a new field that can help alleviate this problem. Visual analytics attempts to seamlessly integrate human abilities in pattern recognition, domain knowledge, and synthesis with automatic analysis techniques. I propose a novel, visual analytics pipeline and prototype which eases discovery, com- parison, and exploration in the outputs of complex computational biology datasets. The approach utilizes automatic feature extraction by image segmentation to locate regions of interest in the data, visually presents the features to users in an intuitive way, and provides rich interactions for multi-resolution visual exploration. Functional- ity is also provided for subspace exploration based on automatic similarity calculation and comparative visualizations. The effectiveness of feature discovery and subspace exploration is shown through a user study and user scenarios. Feedback from analysts confirms the suitability of the proposed solution to domain tasks
Kernel Manifold Alignment
We introduce a kernel method for manifold alignment (KEMA) and domain
adaptation that can match an arbitrary number of data sources without needing
corresponding pairs, just few labeled examples in all domains. KEMA has
interesting properties: 1) it generalizes other manifold alignment methods, 2)
it can align manifolds of very different complexities, performing a sort of
manifold unfolding plus alignment, 3) it can define a domain-specific metric to
cope with multimodal specificities, 4) it can align data spaces of different
dimensionality, 5) it is robust to strong nonlinear feature deformations, and
6) it is closed-form invertible which allows transfer across-domains and data
synthesis. We also present a reduced-rank version for computational efficiency
and discuss the generalization performance of KEMA under Rademacher principles
of stability. KEMA exhibits very good performance over competing methods in
synthetic examples, visual object recognition and recognition of facial
expressions tasks
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Face image super-resolution using 2D CCA
In this paper a face super-resolution method using two-dimensional canonical correlation analysis (2D CCA) is presented. A detail compensation step is followed to add high-frequency components to the reconstructed high-resolution face. Unlike most of the previous researches on face super-resolution algorithms that first transform the images into vectors, in our approach the relationship between the high-resolution and the low-resolution face image are maintained in their original 2D representation. In addition, rather than approximating the entire face, different parts of a face image are super-resolved separately to better preserve the local structure. The proposed method is compared with various state-of-the-art super-resolution algorithms using multiple evaluation criteria including face recognition performance. Results on publicly available datasets show that the proposed method super-resolves high quality face images which are very close to the ground-truth and performance gain is not dataset dependent. The method is very efficient in both the training and testing phases compared to the other approaches. © 2013 Elsevier B.V
Tensor Analysis and Fusion of Multimodal Brain Images
Current high-throughput data acquisition technologies probe dynamical systems
with different imaging modalities, generating massive data sets at different
spatial and temporal resolutions posing challenging problems in multimodal data
fusion. A case in point is the attempt to parse out the brain structures and
networks that underpin human cognitive processes by analysis of different
neuroimaging modalities (functional MRI, EEG, NIRS etc.). We emphasize that the
multimodal, multi-scale nature of neuroimaging data is well reflected by a
multi-way (tensor) structure where the underlying processes can be summarized
by a relatively small number of components or "atoms". We introduce
Markov-Penrose diagrams - an integration of Bayesian DAG and tensor network
notation in order to analyze these models. These diagrams not only clarify
matrix and tensor EEG and fMRI time/frequency analysis and inverse problems,
but also help understand multimodal fusion via Multiway Partial Least Squares
and Coupled Matrix-Tensor Factorization. We show here, for the first time, that
Granger causal analysis of brain networks is a tensor regression problem, thus
allowing the atomic decomposition of brain networks. Analysis of EEG and fMRI
recordings shows the potential of the methods and suggests their use in other
scientific domains.Comment: 23 pages, 15 figures, submitted to Proceedings of the IEE
Model-Based Environmental Visual Perception for Humanoid Robots
The visual perception of a robot should answer two fundamental questions: What? and Where? In order to properly and efficiently reply to these questions, it is essential to establish a bidirectional coupling between the external stimuli and the internal representations. This coupling links the physical world with the inner abstraction models by sensor transformation, recognition, matching and optimization algorithms. The objective of this PhD is to establish this sensor-model coupling
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