11,737 research outputs found
A unified approach to linking experimental, statistical and computational analysis of spike train data
A fundamental issue in neuroscience is how to identify the multiple biophysical mechanisms through which neurons generate observed patterns of spiking activity. In previous work, we proposed a method for linking observed patterns of spiking activity to specific biophysical mechanisms based on a state space modeling framework and a sequential Monte Carlo, or particle filter, estimation algorithm. We have shown, in simulation, that this approach is able to identify a space of simple biophysical models that were consistent with observed spiking data (and included the model that generated the data), but have yet to demonstrate the application of the method to identify realistic currents from real spike train data. Here, we apply the particle filter to spiking data recorded from rat layer V cortical neurons, and correctly identify the dynamics of an slow, intrinsic current. The underlying intrinsic current is successfully identified in four distinct neurons, even though the cells exhibit two distinct classes of spiking activity: regular spiking and bursting. This approach – linking statistical, computational, and experimental neuroscience – provides an effective technique to constrain detailed biophysical models to specific mechanisms consistent with observed spike train data.Published versio
Macroscopic equations governing noisy spiking neuronal populations
At functional scales, cortical behavior results from the complex interplay of
a large number of excitable cells operating in noisy environments. Such systems
resist to mathematical analysis, and computational neurosciences have largely
relied on heuristic partial (and partially justified) macroscopic models, which
successfully reproduced a number of relevant phenomena. The relationship
between these macroscopic models and the spiking noisy dynamics of the
underlying cells has since then been a great endeavor. Based on recent
mean-field reductions for such spiking neurons, we present here {a principled
reduction of large biologically plausible neuronal networks to firing-rate
models, providing a rigorous} relationship between the macroscopic activity of
populations of spiking neurons and popular macroscopic models, under a few
assumptions (mainly linearity of the synapses). {The reduced model we derive
consists of simple, low-dimensional ordinary differential equations with}
parameters and {nonlinearities derived from} the underlying properties of the
cells, and in particular the noise level. {These simple reduced models are
shown to reproduce accurately the dynamics of large networks in numerical
simulations}. Appropriate parameters and functions are made available {online}
for different models of neurons: McKean, Fitzhugh-Nagumo and Hodgkin-Huxley
models
Stochastic dynamics of a finite-size spiking neural network
We present a simple Markov model of spiking neural dynamics that can be
analytically solved to characterize the stochastic dynamics of a finite-size
spiking neural network. We give closed-form estimates for the equilibrium
distribution, mean rate, variance and autocorrelation function of the network
activity. The model is applicable to any network where the probability of
firing of a neuron in the network only depends on the number of neurons that
fired in a previous temporal epoch. Networks with statistically homogeneous
connectivity and membrane and synaptic time constants that are not excessively
long could satisfy these conditions. Our model completely accounts for the size
of the network and correlations in the firing activity. It also allows us to
examine how the network dynamics can deviate from mean-field theory. We show
that the model and solutions are applicable to spiking neural networks in
biophysically plausible parameter regimes
Firing patterns in the adaptive exponential integrate-and-fire model
For simulations of large spiking neuron networks, an accurate, simple and versatile single-neuron modeling framework is required. Here we explore the versatility of a simple two-equation model: the adaptive exponential integrate-and-fire neuron. We show that this model generates multiple firing patterns depending on the choice of parameter values, and present a phase diagram describing the transition from one firing type to another. We give an analytical criterion to distinguish between continuous adaption, initial bursting, regular bursting and two types of tonic spiking. Also, we report that the deterministic model is capable of producing irregular spiking when stimulated with constant current, indicating low-dimensional chaos. Lastly, the simple model is fitted to real experiments of cortical neurons under step current stimulation. The results provide support for the suitability of simple models such as the adaptive exponential integrate-and-fire neuron for large network simulation
- …