Developments in the theory of randomized shortest paths with a comparison of graph node distances

There have lately been several suggestions for parametrized distances on a graph that generalize the shortest path distance and the commute time or resistance distance. The need for developing such distances has risen from the observation that the above-mentioned common distances in many situations fail to take into account the global structure of the graph. In this article, we develop the theory of one family of graph node distances, known as the randomized shortest path dissimilarity, which has its foundation in statistical physics. We show that the randomized shortest path dissimilarity can be easily computed in closed form for all pairs of nodes of a graph. Moreover, we come up with a new definition of a distance measure that we call the free energy distance. The free energy distance can be seen as an upgrade of the randomized shortest path dissimilarity as it defines a metric, in addition to which it satisfies the graph-geodetic property. The derivation and computation of the free energy distance are also straightforward. We then make a comparison between a set of generalized distances that interpolate between the shortest path distance and the commute time, or resistance distance. This comparison focuses on the applicability of the distances in graph node clustering and classification. The comparison, in general, shows that the parametrized distances perform well in the tasks. In particular, we see that the results obtained with the free energy distance are among the best in all the experiments.Comment: 30 pages, 4 figures, 3 table

The Network Analysis of Urban Streets: A Primal Approach

The network metaphor in the analysis of urban and territorial cases has a long tradition especially in transportation/land-use planning and economic geography. More recently, urban design has brought its contribution by means of the "space syntax" methodology. All these approaches, though under different terms like accessibility, proximity, integration,connectivity, cost or effort, focus on the idea that some places (or streets) are more important than others because they are more central. The study of centrality in complex systems,however, originated in other scientific areas, namely in structural sociology, well before its use in urban studies; moreover, as a structural property of the system, centrality has never been extensively investigated metrically in geographic networks as it has been topologically in a wide range of other relational networks like social, biological or technological. After two previous works on some structural properties of the dual and primal graph representations of urban street networks (Porta et al. cond-mat/0411241; Crucitti et al. physics/0504163), in this paper we provide an in-depth investigation of centrality in the primal approach as compared to the dual one, with a special focus on potentials for urban design.Comment: 19 page, 4 figures. Paper related to the paper "The Network Analysis of Urban Streets: A Dual Approach" cond-mat/041124

Shortest path embeddings of graphs on surfaces

The classical theorem of F\'{a}ry states that every planar graph can be represented by an embedding in which every edge is represented by a straight line segment. We consider generalizations of F\'{a}ry's theorem to surfaces equipped with Riemannian metrics. In this setting, we require that every edge is drawn as a shortest path between its two endpoints and we call an embedding with this property a shortest path embedding. The main question addressed in this paper is whether given a closed surface S, there exists a Riemannian metric for which every topologically embeddable graph admits a shortest path embedding. This question is also motivated by various problems regarding crossing numbers on surfaces. We observe that the round metrics on the sphere and the projective plane have this property. We provide flat metrics on the torus and the Klein bottle which also have this property. Then we show that for the unit square flat metric on the Klein bottle there exists a graph without shortest path embeddings. We show, moreover, that for large g, there exist graphs G embeddable into the orientable surface of genus g, such that with large probability a random hyperbolic metric does not admit a shortest path embedding of G, where the probability measure is proportional to the Weil-Petersson volume on moduli space. Finally, we construct a hyperbolic metric on every orientable surface S of genus g, such that every graph embeddable into S can be embedded so that every edge is a concatenation of at most O(g) shortest paths.Comment: 22 pages, 11 figures: Version 3 is updated after comments of reviewer

Shortest path distance in random k-nearest neighbor graphs

Consider a weighted or unweighted k-nearest neighbor graph that has been built on n data points drawn randomly according to some density p on R^d. We study the convergence of the shortest path distance in such graphs as the sample size tends to infinity. We prove that for unweighted kNN graphs, this distance converges to an unpleasant distance function on the underlying space whose properties are detrimental to machine learning. We also study the behavior of the shortest path distance in weighted kNN graphs.Comment: Appears in Proceedings of the 29th International Conference on Machine Learning (ICML 2012