Pair-Linking for Collective Entity Disambiguation: Two Could Be Better Than All

Collective entity disambiguation aims to jointly resolve multiple mentions by linking them to their associated entities in a knowledge base. Previous works are primarily based on the underlying assumption that entities within the same document are highly related. However, the extend to which these mentioned entities are actually connected in reality is rarely studied and therefore raises interesting research questions. For the first time, we show that the semantic relationships between the mentioned entities are in fact less dense than expected. This could be attributed to several reasons such as noise, data sparsity and knowledge base incompleteness. As a remedy, we introduce MINTREE, a new tree-based objective for the entity disambiguation problem. The key intuition behind MINTREE is the concept of coherence relaxation which utilizes the weight of a minimum spanning tree to measure the coherence between entities. Based on this new objective, we design a novel entity disambiguation algorithms which we call Pair-Linking. Instead of considering all the given mentions, Pair-Linking iteratively selects a pair with the highest confidence at each step for decision making. Via extensive experiments, we show that our approach is not only more accurate but also surprisingly faster than many state-of-the-art collective linking algorithms

SlideSort: all pairs similarity search for short reads

Motivation: Recent progress in DNA sequencing technologies calls for fast and accurate algorithms that can evaluate sequence similarity for a huge amount of short reads. Searching similar pairs from a string pool is a fundamental process of de novo genome assembly, genome-wide alignment and other important analyses

Methods of Hierarchical Clustering

We survey agglomerative hierarchical clustering algorithms and discuss efficient implementations that are available in R and other software environments. We look at hierarchical self-organizing maps, and mixture models. We review grid-based clustering, focusing on hierarchical density-based approaches. Finally we describe a recently developed very efficient (linear time) hierarchical clustering algorithm, which can also be viewed as a hierarchical grid-based algorithm.Comment: 21 pages, 2 figures, 1 table, 69 reference

Learning Language from a Large (Unannotated) Corpus

A novel approach to the fully automated, unsupervised extraction of dependency grammars and associated syntax-to-semantic-relationship mappings from large text corpora is described. The suggested approach builds on the authors' prior work with the Link Grammar, RelEx and OpenCog systems, as well as on a number of prior papers and approaches from the statistical language learning literature. If successful, this approach would enable the mining of all the information needed to power a natural language comprehension and generation system, directly from a large, unannotated corpus.Comment: 29 pages, 5 figures, research proposa