9,889 research outputs found
Automatic annotation of bioinformatics workflows with biomedical ontologies
Legacy scientific workflows, and the services within them, often present
scarce and unstructured (i.e. textual) descriptions. This makes it difficult to
find, share and reuse them, thus dramatically reducing their value to the
community. This paper presents an approach to annotating workflows and their
subcomponents with ontology terms, in an attempt to describe these artifacts in
a structured way. Despite a dearth of even textual descriptions, we
automatically annotated 530 myExperiment bioinformatics-related workflows,
including more than 2600 workflow-associated services, with relevant
ontological terms. Quantitative evaluation of the Information Content of these
terms suggests that, in cases where annotation was possible at all, the
annotation quality was comparable to manually curated bioinformatics resources.Comment: 6th International Symposium on Leveraging Applications (ISoLA 2014
conference), 15 pages, 4 figure
Where are your Manners? Sharing Best Community Practices in the Web 2.0
The Web 2.0 fosters the creation of communities by offering users a wide
array of social software tools. While the success of these tools is based on
their ability to support different interaction patterns among users by imposing
as few limitations as possible, the communities they support are not free of
rules (just think about the posting rules in a community forum or the editing
rules in a thematic wiki). In this paper we propose a framework for the sharing
of best community practices in the form of a (potentially rule-based)
annotation layer that can be integrated with existing Web 2.0 community tools
(with specific focus on wikis). This solution is characterized by minimal
intrusiveness and plays nicely within the open spirit of the Web 2.0 by
providing users with behavioral hints rather than by enforcing the strict
adherence to a set of rules.Comment: ACM symposium on Applied Computing, Honolulu : \'Etats-Unis
d'Am\'erique (2009
A Web-Based Tool for Analysing Normative Documents in English
Our goal is to use formal methods to analyse normative documents written in
English, such as privacy policies and service-level agreements. This requires
the combination of a number of different elements, including information
extraction from natural language, formal languages for model representation,
and an interface for property specification and verification. We have worked on
a collection of components for this task: a natural language extraction tool, a
suitable formalism for representing such documents, an interface for building
models in this formalism, and methods for answering queries asked of a given
model. In this work, each of these concerns is brought together in a web-based
tool, providing a single interface for analysing normative texts in English.
Through the use of a running example, we describe each component and
demonstrate the workflow established by our tool
The fusion of law and information technology
In information society, legal norm communications have been never established in certain fields for a long time. That is, a few legal norms have never obeyed in the fields. Above all, legal norms which relate to data protection, information contents and information security, would often infringed. Most violation would be conducted by using information technologies. Information technologies would often be used in these infringing incidents. It can be said that these infringing incidents would have never been conducted without information technology. These infringing incidents include hacking actions, personal data abuse, personal information disclosure, unauthorized access, infringing copyrights, infringing privacy rights, and so on. A way of preventing those infringements is to raise the level of punishment against the violators. But, it will prove to be disappointing. Furthermore, it would be an ex post facto measure to the last. It would be needed to invent an ex ante measure, if it is possible. As the ex ante measure, the author proposes a fusion of law and information technology. An information technology will lead people to a lawful deed when they conduct actions in using computers and networks. They say that information technology cures information technology. After all, the fusion will aim at realizing laws, and it will contribute to recover a social justice
Research and Development Workstation Environment: the new class of Current Research Information Systems
Against the backdrop of the development of modern technologies in the field
of scientific research the new class of Current Research Information Systems
(CRIS) and related intelligent information technologies has arisen. It was
called - Research and Development Workstation Environment (RDWE) - the
comprehensive problem-oriented information systems for scientific research and
development lifecycle support. The given paper describes design and development
fundamentals of the RDWE class systems. The RDWE class system's generalized
information model is represented in the article as a three-tuple composite web
service that include: a set of atomic web services, each of them can be
designed and developed as a microservice or a desktop application, that allows
them to be used as an independent software separately; a set of functions, the
functional filling-up of the Research and Development Workstation Environment;
a subset of atomic web services that are required to implement function of
composite web service. In accordance with the fundamental information model of
the RDWE class the system for supporting research in the field of ontology
engineering - the automated building of applied ontology in an arbitrary domain
area, scientific and technical creativity - the automated preparation of
application documents for patenting inventions in Ukraine was developed. It was
called - Personal Research Information System. A distinctive feature of such
systems is the possibility of their problematic orientation to various types of
scientific activities by combining on a variety of functional services and
adding new ones within the cloud integrated environment. The main results of
our work are focused on enhancing the effectiveness of the scientist's research
and development lifecycle in the arbitrary domain area.Comment: In English, 13 pages, 1 figure, 1 table, added references in Russian.
Published. Prepared for special issue (UkrPROG 2018 conference) of the
scientific journal "Problems of programming" (Founder: National Academy of
Sciences of Ukraine, Institute of Software Systems of NAS Ukraine
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