Research and Development Workstation Environment: the new class of Current Research Information Systems

Against the backdrop of the development of modern technologies in the field of scientific research the new class of Current Research Information Systems (CRIS) and related intelligent information technologies has arisen. It was called - Research and Development Workstation Environment (RDWE) - the comprehensive problem-oriented information systems for scientific research and development lifecycle support. The given paper describes design and development fundamentals of the RDWE class systems. The RDWE class system's generalized information model is represented in the article as a three-tuple composite web service that include: a set of atomic web services, each of them can be designed and developed as a microservice or a desktop application, that allows them to be used as an independent software separately; a set of functions, the functional filling-up of the Research and Development Workstation Environment; a subset of atomic web services that are required to implement function of composite web service. In accordance with the fundamental information model of the RDWE class the system for supporting research in the field of ontology engineering - the automated building of applied ontology in an arbitrary domain area, scientific and technical creativity - the automated preparation of application documents for patenting inventions in Ukraine was developed. It was called - Personal Research Information System. A distinctive feature of such systems is the possibility of their problematic orientation to various types of scientific activities by combining on a variety of functional services and adding new ones within the cloud integrated environment. The main results of our work are focused on enhancing the effectiveness of the scientist's research and development lifecycle in the arbitrary domain area.Comment: In English, 13 pages, 1 figure, 1 table, added references in Russian. Published. Prepared for special issue (UkrPROG 2018 conference) of the scientific journal "Problems of programming" (Founder: National Academy of Sciences of Ukraine, Institute of Software Systems of NAS Ukraine

Opportunities in Software Engineering Research for Web API Consumption

Nowadays, invoking third party code increasingly involves calling web services via their web APIs, as opposed to the more traditional scenario of downloading a library and invoking the library's API. However, there are also new challenges for developers calling these web APIs. In this paper, we highlight a broad set of these challenges and argue for resulting opportunities for software engineering research to support developers in consuming web APIs. We outline two specific research threads in this context: (1) web API specification curation, which enables us to know the signatures of web APIs, and (2) static analysis that is capable of extracting URLs, HTTP methods etc. of web API calls. Furthermore, we present new work on how we combine (1) and (2) to provide IDE support for application developers consuming web APIs. As web APIs are used broadly, research in supporting the consumption of web APIs offers exciting opportunities.Comment: Erik Wittern and Annie Ying are both first author

The Design and Operation of The Keck Observatory Archive

The Infrared Processing and Analysis Center (IPAC) and the W. M. Keck Observatory (WMKO) operate an archive for the Keck Observatory. At the end of 2013, KOA completed the ingestion of data from all eight active observatory instruments. KOA will continue to ingest all newly obtained observations, at an anticipated volume of 4 TB per year. The data are transmitted electronically from WMKO to IPAC for storage and curation. Access to data is governed by a data use policy, and approximately two-thirds of the data in the archive are public.Comment: 12 pages, 4 figs, 4 tables. Presented at Software and Cyberinfrastructure for Astronomy III, SPIE Astronomical Telescopes + Instrumentation 2014. June 2014, Montreal, Canad

Statically Checking Web API Requests in JavaScript

Many JavaScript applications perform HTTP requests to web APIs, relying on the request URL, HTTP method, and request data to be constructed correctly by string operations. Traditional compile-time error checking, such as calling a non-existent method in Java, are not available for checking whether such requests comply with the requirements of a web API. In this paper, we propose an approach to statically check web API requests in JavaScript. Our approach first extracts a request's URL string, HTTP method, and the corresponding request data using an inter-procedural string analysis, and then checks whether the request conforms to given web API specifications. We evaluated our approach by checking whether web API requests in JavaScript files mined from GitHub are consistent or inconsistent with publicly available API specifications. From the 6575 requests in scope, our approach determined whether the request's URL and HTTP method was consistent or inconsistent with web API specifications with a precision of 96.0%. Our approach also correctly determined whether extracted request data was consistent or inconsistent with the data requirements with a precision of 87.9% for payload data and 99.9% for query data. In a systematic analysis of the inconsistent cases, we found that many of them were due to errors in the client code. The here proposed checker can be integrated with code editors or with continuous integration tools to warn programmers about code containing potentially erroneous requests.Comment: International Conference on Software Engineering, 201

Reverse Engineering and Testing of Rich Internet Applications

The World Wide Web experiences a continuous and constant evolution, where new initiatives, standards, approaches and technologies are continuously proposed for developing more effective and higher quality Web applications. To satisfy the growing request of the market for Web applications, new technologies, frameworks, tools and environments that allow to develop Web and mobile applications with the least effort and in very short time have been introduced in the last years. These new technologies have made possible the dawn of a new generation of Web applications, named Rich Internet Applications (RIAs), that offer greater usability and interactivity than traditional ones. This evolution has been accompanied by some drawbacks that are mostly due to the lack of applying well-known software engineering practices and approaches. As a consequence, new research questions and challenges have emerged in the field of web and mobile applications maintenance and testing. The research activity described in this thesis has addressed some of these topics with the specific aim of proposing new and effective solutions to the problems of modelling, reverse engineering, comprehending, re-documenting and testing existing RIAs. Due to the growing relevance of mobile applications in the renewed Web scenarios, the problem of testing mobile applications developed for the Android operating system has been addressed too, in an attempt of exploring and proposing new techniques of testing automation for these type of applications

Asterias: a parallelized web-based suite for the analysis of expression and aCGH data

Asterias (\url{http://www.asterias.info}) is an integrated collection of freely-accessible web tools for the analysis of gene expression and aCGH data. Most of the tools use parallel computing (via MPI). Most of our applications allow the user to obtain additional information for user-selected genes by using clickable links in tables and/or figures. Our tools include: normalization of expression and aCGH data; converting between different types of gene/clone and protein identifiers; filtering and imputation; finding differentially expressed genes related to patient class and survival data; searching for models of class prediction; using random forests to search for minimal models for class prediction or for large subsets of genes with predictive capacity; searching for molecular signatures and predictive genes with survival data; detecting regions of genomic DNA gain or loss. The capability to send results between different applications, access to additional functional information, and parallelized computation make our suite unique and exploit features only available to web-based applications.Comment: web based application; 3 figure

Lightweight Multilingual Software Analysis

Developer preferences, language capabilities and the persistence of older languages contribute to the trend that large software codebases are often multilingual, that is, written in more than one computer language. While developers can leverage monolingual software development tools to build software components, companies are faced with the problem of managing the resultant large, multilingual codebases to address issues with security, efficiency, and quality metrics. The key challenge is to address the opaque nature of the language interoperability interface: one language calling procedures in a second (which may call a third, or even back to the first), resulting in a potentially tangled, inefficient and insecure codebase. An architecture is proposed for lightweight static analysis of large multilingual codebases: the MLSA architecture. Its modular and table-oriented structure addresses the open-ended nature of multiple languages and language interoperability APIs. We focus here as an application on the construction of call-graphs that capture both inter-language and intra-language calls. The algorithms for extracting multilingual call-graphs from codebases are presented, and several examples of multilingual software engineering analysis are discussed. The state of the implementation and testing of MLSA is presented, and the implications for future work are discussed.Comment: 15 page