Topics in Graph Algorithms: Structural Results and Algorithmic Techniques, with Applications

Coping with computational intractability has inspired the development of a variety of algorithmic techniques. The main challenge has usually been the design of polynomial time algorithms for NP-complete problems in a way that guarantees some, often worst-case, satisfactory performance when compared to exact (optimal) solutions. We mainly study some emergent techniques that help to bridge the gap between computational intractability and practicality. We present results that lead to better exact and approximation algorithms and better implementations. The problems considered in this dissertation share much in common structurally, and have applications in several scientific domains, including circuit design, network reliability, and bioinformatics. We begin by considering the relationship between graph coloring and the immersion order, a well-quasi-order defined on the set of finite graphs. We establish several (structural) results and discuss their potential algorithmic consequences. We discuss graph metrics such as treewidth and pathwidth. Treewidth is well studied, mainly because many problems that are NP-hard in general have polynomial time algorithms when restricted to graphs of bounded treewidth. Pathwidth has many applications ranging from circuit layout to natural language processing. We present a linear time algorithm to approximate the pathwidth of planar graphs that have a fixed disk dimension. We consider the face cover problem, which has potential applications in facilities location and logistics. Being fixed-parameter tractable, we develop an algorithm that solves it in time O(5k + n2) where k is the input parameter. This is a notable improvement over the previous best known algorithm, which runs in O(8kn). In addition to the structural and algorithmic results, this text tries to illustrate the practicality of fixed-parameter algorithms. This is achieved by implementing some algorithms for the vertex cover problem, and conducting experiments on real data sets. Our experiments advocate the viewpoint that, for many practical purposes, exact solutions of some NP-complete problems are affordable

On Strong Diameter Padded Decompositions

Given a weighted graph G=(V,E,w), a partition of V is Delta-bounded if the diameter of each cluster is bounded by Delta. A distribution over Delta-bounded partitions is a beta-padded decomposition if every ball of radius gamma Delta is contained in a single cluster with probability at least e^{-beta * gamma}. The weak diameter of a cluster C is measured w.r.t. distances in G, while the strong diameter is measured w.r.t. distances in the induced graph G[C]. The decomposition is weak/strong according to the diameter guarantee. Formerly, it was proven that K_r free graphs admit weak decompositions with padding parameter O(r), while for strong decompositions only O(r^2) padding parameter was known. Furthermore, for the case of a graph G, for which the induced shortest path metric d_G has doubling dimension ddim, a weak O(ddim)-padded decomposition was constructed, which is also known to be tight. For the case of strong diameter, nothing was known. We construct strong O(r)-padded decompositions for K_r free graphs, matching the state of the art for weak decompositions. Similarly, for graphs with doubling dimension ddim we construct a strong O(ddim)-padded decomposition, which is also tight. We use this decomposition to construct (O(ddim),O~(ddim))-sparse cover scheme for such graphs. Our new decompositions and cover have implications to approximating unique games, the construction of light and sparse spanners, and for path reporting distance oracles

Derandomizing Isolation Lemma for K3,3-free and K5-free Bipartite Graphs

The perfect matching problem has a randomized NC algorithm, using the celebrated Isolation Lemma of Mulmuley, Vazirani and Vazirani. The Isolation Lemma states that giving a random weight assignment to the edges of a graph, ensures that it has a unique minimum weight perfect matching, with a good probability. We derandomize this lemma for K3,3-free and K5-free bipartite graphs, i.e. we give a deterministic log-space construction of such a weight assignment for these graphs. Such a construction was known previously for planar bipartite graphs. Our result implies that the perfect matching problem for K3,3-free and K5-free bipartite graphs is in SPL. It also gives an alternate proof for an already known result – reachability for K3,3-free and K5-free graphs is in UL.