Calibration of an orientation sensor for freehand 3D ultrasound and its use in a hybrid acquisition system

BACKGROUND: Freehand 3D ultrasound is a powerful imaging modality with many potential applications. However, its reliance on add-on position sensors, which can be expensive, obtrusive and difficult to calibrate, is a major drawback. Alternatively, freehand 3D ultrasound can be acquired without a position sensor using image-based techniques. Sensorless reconstructions exhibit good fine scale detail but are prone to tracking drift, resulting in large scale geometrical distortions. METHOD: We investigate an alternative position sensor, the Xsens MT9-B, which is relatively unobtrusive but measures orientation only. We describe a straightforward approach to calibrating the sensor, and we measure the calibration precision (by repeated calibrations) and the orientation accuracy (using independent orientation measurements). We introduce algorithms that allow the MT9-B potentially to correct both linear and angular drift in sensorless reconstructions. RESULTS: The MT9-B can be calibrated to a precision of around 1 degrees . Reconstruction accuracy is also around 1 degrees . The MT9-B was able to eliminate angular drift in sensorless reconstructions, though it had little impact on linear drift. In comparison, six degree-of-freedom drift correction was shown to produce excellent reconstructions. CONCLUSION: Gold standard freehand 3D ultrasound acquisition requires the synthesis of image-based techniques, for good fine scale detail, and position sensors, for good large scale geometrical accuracy. A hybrid system incorporating the MT9-B offers an attractive compromise between quality and ease of use. The position sensor is unobtrusive and the system is capable of faithful acquisition, with the one exception of linear drift in the elevational direction

A Survey on 3D Ultrasound Reconstruction Techniques

This book chapter aims to discuss the 3D ultrasound reconstruction and visualization. First, the various types of 3D ultrasound system are reviewed, such as mechanical, 2D array, position tracking-based freehand, and untracked-based freehand. Second, the 3D ultrasound reconstruction technique or pipeline used by the current existing system, which includes the data acquisition, data preprocessing, reconstruction method and 3D visualization, is discussed. The reconstruction method and 3D visualization will be emphasized. The reconstruction method includes the pixel-based method, volume-based method, and function-based method, accompanied with their benefits and drawbacks. In the 3D visualization, methods such as multiplanar reformatting, volume rendering, and surface rendering are presented. Lastly, its application in the medical field is reviewed as well

Thoracic wall reconstruction using ultrasound images to model/bend the thoracic prosthesis for correction of pectus excavatum

Pectus excavatum is the most common congenital deformity of the anterior thoracic wall. The surgical correction of such deformity, using Nuss procedure, consists in the placement of a personalized convex prosthesis into sub-sternal position to correct the deformity. The aim of this work is the CT-scan substitution by ultrasound imaging for the pre-operative diagnosis and pre-modeling of the prosthesis, in order to avoid patient radiation exposure. To accomplish this, ultrasound images are acquired along an axial plane, followed by a rigid registration method to obtain the spatial transformation between subsequent images. These images are overlapped to reconstruct an axial plane equivalent to a CT-slice. A phantom was used to conduct preliminary experiments and the achieved results were compared with the corresponding CT-data, showing that the proposed methodology can be capable to create a valid approximation of the anterior thoracic wall, which can be used to model/bend the prosthesis.Fundação para a Ciencia e Tecnologia (FCT

Trackerless freehand ultrasound with sequence modelling and auxiliary transformation over past and future frames

Three-dimensional (3D) freehand ultrasound (US) reconstruction without a tracker can be advantageous over its two-dimensional or tracked counterparts in many clinical applications. In this paper, we propose to estimate 3D spatial transformation between US frames from both past and future 2D images, using feed-forward and recurrent neural networks (RNNs). With the temporally available frames, a further multi-task learning algorithm is proposed to utilise a large number of auxiliary transformation-predicting tasks between them. Using more than 40,000 US frames acquired from 228 scans on 38 forearms of 19 volunteers in a volunteer study, the hold-out test performance is quantified by frame prediction accuracy, volume reconstruction overlap, accumulated tracking error and final drift, based on ground-truth from an optical tracker. The results show the importance of modelling the temporal-spatially correlated input frames as well as output transformations, with further improvement owing to additional past and/or future frames. The best performing model was associated with predicting transformation between moderately-spaced frames, with an interval of less than ten frames at 20 frames per second (fps). Little benefit was observed by adding frames more than one second away from the predicted transformation, with or without LSTM-based RNNs. Interestingly, with the proposed approach, explicit within-sequence loss that encourages consistency in composing transformations or minimises accumulated error may no longer be required. The implementation code and volunteer data will be made publicly available ensuring reproducibility and further research.Comment: 10 pages, 4 figures, Paper submitted to IEEE International Symposium on Biomedical Imaging (ISBI

Towards Non-contact 3D Ultrasound for Wrist Imaging

Objective: The objective of this work is an attempt towards non-contact freehand 3D ultrasound imaging with minimal complexity added to the existing point of care ultrasound (POCUS) systems. Methods: This study proposes a novel approach of using a mechanical track for non-contact ultrasound (US) scanning. The approach thus restricts the probe motion to a linear plane, to simplify the acquisition and 3D reconstruction process. A pipeline for US 3D volume reconstruction employing an US research platform and a GPU-based edge device is developed. Results: The efficacy of the proposed approach is demonstrated through ex-vivo and in-vivo experiments. Conclusion: The proposed approach with the adjustable field of view capability, non-contact design, and low cost of deployment without significantly altering the existing setup would open doors for up gradation of traditional systems to a wide range of 3D US imaging applications. Significance: Ultrasound (US) imaging is a popular clinical imaging modality for the point-of-care bedside imaging, particularly of the wrist/knee in the pediatric population due to its non-invasive and radiation free nature. However, the limited views of tissue structures obtained with 2D US in such scenarios make the diagnosis challenging. To overcome this, 3D US imaging which uses 2D US images and their orientation/position to reconstruct 3D volumes was developed. The accurate position estimation of the US probe at low cost has always stood as a challenging task in 3D reconstruction. Additionally, US imaging involves contact, which causes difficulty to pediatric subjects while monitoring live fractures or open wounds. Towards overcoming these challenges, a novel framework is attempted in this work.Comment: 9 Pages, 11 figure

Privileged Anatomical and Protocol Discrimination in Trackerless 3D Ultrasound Reconstruction

Three-dimensional (3D) freehand ultrasound (US) reconstruction without using any additional external tracking device has seen recent advances with deep neural networks (DNNs). In this paper, we first investigated two identified contributing factors of the learned inter-frame correlation that enable the DNN-based reconstruction: anatomy and protocol. We propose to incorporate the ability to represent these two factors - readily available during training - as the privileged information to improve existing DNN-based methods. This is implemented in a new multi-task method, where the anatomical and protocol discrimination are used as auxiliary tasks. We further develop a differentiable network architecture to optimise the branching location of these auxiliary tasks, which controls the ratio between shared and task-specific network parameters, for maximising the benefits from the two auxiliary tasks. Experimental results, on a dataset with 38 forearms of 19 volunteers acquired with 6 different scanning protocols, show that 1) both anatomical and protocol variances are enabling factors for DNN-based US reconstruction; 2) learning how to discriminate different subjects (anatomical variance) and predefined types of scanning paths (protocol variance) both significantly improve frame prediction accuracy, volume reconstruction overlap, accumulated tracking error and final drift, using the proposed algorithm.Comment: Accepted to Advances in Simplifying Medical UltraSound (ASMUS) workshop at MICCAI 202

A Simplified 3D Ultrasound Freehand Imaging Framework Using 1D Linear Probe and Low-Cost Mechanical Track

Ultrasound imaging is the most popular medical imaging modality for point-of-care bedside imaging. However, 2D ultrasound imaging provides only limited views of the organ of interest, making diagnosis challenging. To overcome this, 3D ultrasound imaging was developed, which uses 2D ultrasound images and their orientation/position to reconstruct 3D volumes. The accurate position estimation of the ultrasound probe at low cost has always stood as a challenging task in 3D reconstruction. In this study, we propose a novel approach of using a mechanical track for ultrasound scanning, which restricts the probe motion to a linear plane, simplifying the acquisition and hence the reconstruction process. We also present an end-to-end pipeline for 3D ultrasound volume reconstruction and demonstrate its efficacy with an in-vitro tube phantom study and an ex-vivo bone experiment. The comparison between a sensorless freehand and the proposed mechanical track based acquisition is available online (shorturl.at/jqvX0).Comment: 4 pages, 4 figure