Semi-Supervised Learning with Scarce Annotations

While semi-supervised learning (SSL) algorithms provide an efficient way to make use of both labelled and unlabelled data, they generally struggle when the number of annotated samples is very small. In this work, we consider the problem of SSL multi-class classification with very few labelled instances. We introduce two key ideas. The first is a simple but effective one: we leverage the power of transfer learning among different tasks and self-supervision to initialize a good representation of the data without making use of any label. The second idea is a new algorithm for SSL that can exploit well such a pre-trained representation. The algorithm works by alternating two phases, one fitting the labelled points and one fitting the unlabelled ones, with carefully-controlled information flow between them. The benefits are greatly reducing overfitting of the labelled data and avoiding issue with balancing labelled and unlabelled losses during training. We show empirically that this method can successfully train competitive models with as few as 10 labelled data points per class. More in general, we show that the idea of bootstrapping features using self-supervised learning always improves SSL on standard benchmarks. We show that our algorithm works increasingly well compared to other methods when refining from other tasks or datasets.Comment: Workshop on Deep Vision, CVPR 202

Truncated Variational EM for Semi-Supervised Neural Simpletrons

Inference and learning for probabilistic generative networks is often very challenging and typically prevents scalability to as large networks as used for deep discriminative approaches. To obtain efficiently trainable, large-scale and well performing generative networks for semi-supervised learning, we here combine two recent developments: a neural network reformulation of hierarchical Poisson mixtures (Neural Simpletrons), and a novel truncated variational EM approach (TV-EM). TV-EM provides theoretical guarantees for learning in generative networks, and its application to Neural Simpletrons results in particularly compact, yet approximately optimal, modifications of learning equations. If applied to standard benchmarks, we empirically find, that learning converges in fewer EM iterations, that the complexity per EM iteration is reduced, and that final likelihood values are higher on average. For the task of classification on data sets with few labels, learning improvements result in consistently lower error rates if compared to applications without truncation. Experiments on the MNIST data set herein allow for comparison to standard and state-of-the-art models in the semi-supervised setting. Further experiments on the NIST SD19 data set show the scalability of the approach when a manifold of additional unlabeled data is available

AffinityNet: semi-supervised few-shot learning for disease type prediction

While deep learning has achieved great success in computer vision and many other fields, currently it does not work very well on patient genomic data with the "big p, small N" problem (i.e., a relatively small number of samples with high-dimensional features). In order to make deep learning work with a small amount of training data, we have to design new models that facilitate few-shot learning. Here we present the Affinity Network Model (AffinityNet), a data efficient deep learning model that can learn from a limited number of training examples and generalize well. The backbone of the AffinityNet model consists of stacked k-Nearest-Neighbor (kNN) attention pooling layers. The kNN attention pooling layer is a generalization of the Graph Attention Model (GAM), and can be applied to not only graphs but also any set of objects regardless of whether a graph is given or not. As a new deep learning module, kNN attention pooling layers can be plugged into any neural network model just like convolutional layers. As a simple special case of kNN attention pooling layer, feature attention layer can directly select important features that are useful for classification tasks. Experiments on both synthetic data and cancer genomic data from TCGA projects show that our AffinityNet model has better generalization power than conventional neural network models with little training data. The code is freely available at https://github.com/BeautyOfWeb/AffinityNet .Comment: 14 pages, 6 figure

A Semi-Supervised Two-Stage Approach to Learning from Noisy Labels

The recent success of deep neural networks is powered in part by large-scale well-labeled training data. However, it is a daunting task to laboriously annotate an ImageNet-like dateset. On the contrary, it is fairly convenient, fast, and cheap to collect training images from the Web along with their noisy labels. This signifies the need of alternative approaches to training deep neural networks using such noisy labels. Existing methods tackling this problem either try to identify and correct the wrong labels or reweigh the data terms in the loss function according to the inferred noisy rates. Both strategies inevitably incur errors for some of the data points. In this paper, we contend that it is actually better to ignore the labels of some of the data points than to keep them if the labels are incorrect, especially when the noisy rate is high. After all, the wrong labels could mislead a neural network to a bad local optimum. We suggest a two-stage framework for the learning from noisy labels. In the first stage, we identify a small portion of images from the noisy training set of which the labels are correct with a high probability. The noisy labels of the other images are ignored. In the second stage, we train a deep neural network in a semi-supervised manner. This framework effectively takes advantage of the whole training set and yet only a portion of its labels that are most likely correct. Experiments on three datasets verify the effectiveness of our approach especially when the noisy rate is high