A Unified Nanopublication Model for Effective and User-Friendly Access to the Elements of Scientific Publishing

Scientific publishing is the means by which we communicate and share scientific knowledge, but this process currently often lacks transparency and machine-interpretable representations. Scientific articles are published in long coarse-grained text with complicated structures, and they are optimized for human readers and not for automated means of organization and access. Peer reviewing is the main method of quality assessment, but these peer reviews are nowadays rarely published and their own complicated structure and linking to the respective articles is not accessible. In order to address these problems and to better align scientific publishing with the principles of the Web and Linked Data, we propose here an approach to use nanopublications as a unifying model to represent in a semantic way the elements of publications, their assessments, as well as the involved processes, actors, and provenance in general. To evaluate our approach, we present a dataset of 627 nanopublications representing an interlinked network of the elements of articles (such as individual paragraphs) and their reviews (such as individual review comments). Focusing on the specific scenario of editors performing a meta-review, we introduce seven competency questions and show how they can be executed as SPARQL queries. We then present a prototype of a user interface for that scenario that shows different views on the set of review comments provided for a given manuscript, and we show in a user study that editors find the interface useful to answer their competency questions. In summary, we demonstrate that a unified and semantic publication model based on nanopublications can make scientific communication more effective and user-friendly

The hunt for submarines in classical art: mappings between scientific invention and artistic interpretation

This is a report to the AHRC's ICT in Arts and Humanities Research Programme. This report stems from a project which aimed to produce a series of mappings between advanced imaging information and communications technologies (ICT) and needs within visual arts research. A secondary aim was to demonstrate the feasibility of a structured approach to establishing such mappings. The project was carried out over 2006, from January to December, by the visual arts centre of the Arts and Humanities Data Service (AHDS Visual Arts).1 It was funded by the Arts and Humanities Research Council (AHRC) as one of the Strategy Projects run under the aegis of its ICT in Arts and Humanities Research programme. The programme, which runs from October 2003 until September 2008, aims ‘to develop, promote and monitor the AHRC’s ICT strategy, and to build capacity nation-wide in the use of ICT for arts and humanities research’.2 As part of this, the Strategy Projects were intended to contribute to the programme in two ways: knowledge-gathering projects would inform the programme’s Fundamental Strategic Review of ICT, conducted for the AHRC in the second half of 2006, focusing ‘on critical strategic issues such as e-science and peer-review of digital resources’. Resource-development projects would ‘build tools and resources of broad relevance across the range of the AHRC’s academic subject disciplines’.3 This project fell into the knowledge-gathering strand. The project ran under the leadership of Dr Mike Pringle, Director, AHDS Visual Arts, and the day-to-day management of Polly Christie, Projects Manager, AHDS Visual Arts. The research was carried out by Dr Rupert Shepherd

Evolutionary Subject Tagging in the Humanities; Supporting Discovery and Examination in Digital Cultural Landscapes

In this paper, the authors attempt to identify problematic issues for subject tagging in the humanities, particularly those associated with information objects in digital formats. In the third major section, the authors identify a number of assumptions that lie behind the current practice of subject classification that we think should be challenged. We move then to propose features of classification systems that could increase their effectiveness. These emerged as recurrent themes in many of the conversations with scholars, consultants, and colleagues. Finally, we suggest next steps that we believe will help scholars and librarians develop better subject classification systems to support research in the humanities.NEH Office of Digital Humanities: Digital Humanities Start-Up Grant (HD-51166-10

1st doctoral symposium of the international conference on software language engineering (SLE) : collected research abstracts, October 11, 2010, Eindhoven, The Netherlands

The first Doctoral Symposium to be organised by the series of International Conferences on Software Language Engineering (SLE) will be held on October 11, 2010 in Eindhoven, as part of the 3rd instance of SLE. This conference series aims to integrate the different sub-communities of the software-language engineering community to foster cross-fertilisation and strengthen research overall. The Doctoral Symposium at SLE 2010 aims to contribute towards these goals by providing a forum for both early and late-stage Ph.D. students to present their research and get detailed feedback and advice from researchers both in and out of their particular research area. Consequently, the main objectives of this event are: – to give Ph.D. students an opportunity to write about and present their research; – to provide Ph.D. students with constructive feedback from their peers and from established researchers in their own and in different SLE sub-communities; – to build bridges for potential research collaboration; and – to foster integrated thinking about SLE challenges across sub-communities. All Ph.D. students participating in the Doctoral Symposium submitted an extended abstract describing their doctoral research. Based on a good set of submisssions we were able to accept 13 submissions for participation in the Doctoral Symposium. These proceedings present final revised versions of these accepted research abstracts. We are particularly happy to note that submissions to the Doctoral Symposium covered a wide range of SLE topics drawn from all SLE sub-communities. In selecting submissions for the Doctoral Symposium, we were supported by the members of the Doctoral-Symposium Selection Committee (SC), representing senior researchers from all areas of the SLE community.We would like to thank them for their substantial effort, without which this Doctoral Symposium would not have been possible. Throughout, they have provided reviews that go beyond the normal format of a review being extra careful in pointing out potential areas of improvement of the research or its presentation. Hopefully, these reviews themselves will already contribute substantially towards the goals of the symposium and help students improve and advance their work. Furthermore, all submitting students were also asked to provide two reviews for other submissions. The members of the SC went out of their way to comment on the quality of these reviews helping students improve their reviewing skills

1st doctoral symposium of the international conference on software language engineering (SLE) : collected research abstracts, October 11, 2010, Eindhoven, The Netherlands

The first Doctoral Symposium to be organised by the series of International Conferences on Software Language Engineering (SLE) will be held on October 11, 2010 in Eindhoven, as part of the 3rd instance of SLE. This conference series aims to integrate the different sub-communities of the software-language engineering community to foster cross-fertilisation and strengthen research overall. The Doctoral Symposium at SLE 2010 aims to contribute towards these goals by providing a forum for both early and late-stage Ph.D. students to present their research and get detailed feedback and advice from researchers both in and out of their particular research area. Consequently, the main objectives of this event are: – to give Ph.D. students an opportunity to write about and present their research; – to provide Ph.D. students with constructive feedback from their peers and from established researchers in their own and in different SLE sub-communities; – to build bridges for potential research collaboration; and – to foster integrated thinking about SLE challenges across sub-communities. All Ph.D. students participating in the Doctoral Symposium submitted an extended abstract describing their doctoral research. Based on a good set of submisssions we were able to accept 13 submissions for participation in the Doctoral Symposium. These proceedings present final revised versions of these accepted research abstracts. We are particularly happy to note that submissions to the Doctoral Symposium covered a wide range of SLE topics drawn from all SLE sub-communities. In selecting submissions for the Doctoral Symposium, we were supported by the members of the Doctoral-Symposium Selection Committee (SC), representing senior researchers from all areas of the SLE community.We would like to thank them for their substantial effort, without which this Doctoral Symposium would not have been possible. Throughout, they have provided reviews that go beyond the normal format of a review being extra careful in pointing out potential areas of improvement of the research or its presentation. Hopefully, these reviews themselves will already contribute substantially towards the goals of the symposium and help students improve and advance their work. Furthermore, all submitting students were also asked to provide two reviews for other submissions. The members of the SC went out of their way to comment on the quality of these reviews helping students improve their reviewing skills

Adventures in Semantic Publishing: Exemplar Semantic Enhancements of a Research Article

Scientific innovation depends on finding, integrating, and re-using the products of previous research. Here we explore how recent developments in Web technology, particularly those related to the publication of data and metadata, might assist that process by providing semantic enhancements to journal articles within the mainstream process of scholarly journal publishing. We exemplify this by describing semantic enhancements we have made to a recent biomedical research article taken from PLoS Neglected Tropical Diseases, providing enrichment to its content and increased access to datasets within it. These semantic enhancements include provision of live DOIs and hyperlinks; semantic markup of textual terms, with links to relevant third-party information resources; interactive figures; a re-orderable reference list; a document summary containing a study summary, a tag cloud, and a citation analysis; and two novel types of semantic enrichment: the first, a Supporting Claims Tooltip to permit “Citations in Context”, and the second, Tag Trees that bring together semantically related terms. In addition, we have published downloadable spreadsheets containing data from within tables and figures, have enriched these with provenance information, and have demonstrated various types of data fusion (mashups) with results from other research articles and with Google Maps. We have also published machine-readable RDF metadata both about the article and about the references it cites, for which we developed a Citation Typing Ontology, CiTO (http://purl.org/net/cito/). The enhanced article, which is available at http://dx.doi.org/10.1371/journal.pntd.0000228.x001, presents a compelling existence proof of the possibilities of semantic publication. We hope the showcase of examples and ideas it contains, described in this paper, will excite the imaginations of researchers and publishers, stimulating them to explore the possibilities of semantic publishing for their own research articles, and thereby break down present barriers to the discovery and re-use of information within traditional modes of scholarly communication

Post-Convergent Mediatization: Toward a Media Typology Beyond Web 2.0

In this article, I argue that the concept of convergence, as is still applied to media theory, has become an insufficient way for examining the current state and future of media phenomena. This is substantiated by the fact that digital media continue to exponentially percolate into human experience in ways that transcend mere integration.  I contend that a recognition of post-convergence as a theoretical realization is crucial to future developments in media theory because it presumes that digital media are progressing toward a “digitization of life” in ways that are envisioned within the very logic of digitality. As post-convergence continues its way to become a theoretical realization, media theory should begin posing its questions about the digital not in terms of how traditional media and its attributes prevail in the digital, but of how digitality as an objective reality engenders experiences of the real requiring approaches that can only be formulated from the logic of post-convergence.  From such theorization, I propose a working typology for conceptualizing the possible nature and direction of post-convergent media: hyper-mediation, bio-digitality, hyper-connection, and hyper-simulation

Architecture of participation : the realization of the Semantic Web, and Internet OS

Thesis (S.M.)--Massachusetts Institute of Technology, System Design and Management Program, February 2008.Includes bibliographical references (p. 65-68).The Internet and World Wide Web (WWW) is becoming an integral part of our daily life and touching every part of the society around the world including both well-developed and developing countries. The simple technology and genuine intention of the original WWW, which is to help researchers share and exchange information and data across incompatible platforms and systems, have evolved into something larger and beyond what one could conceive. While WWW has reached the critical mass, many limitations are uncovered. To address the limitations, the development of its extension, the Semantic Web, has been underway for more than five years by the inventor of WWW, Tim Berners-Lee, and the technical community. Yet, no significant impact has been made. Its awareness by the public is surprisingly and unfortunately low. This thesis will review the development effort of the Semantic Web, examine its progress which appears lagging compared to WWW, and propose a promising business model to accelerate its adoption path.by Shelley Lau.S.M

An aesthetics of touch: investigating the language of design relating to form

How well can designers communicate qualities of touch? This paper presents evidence that they have some capability to do so, much of which appears to have been learned, but at present make limited use of such language. Interviews with graduate designer-makers suggest that they are aware of and value the importance of touch and materiality in their work, but lack a vocabulary to fully relate to their detailed explanations of other aspects such as their intent or selection of materials. We believe that more attention should be paid to the verbal dialogue that happens in the design process, particularly as other researchers show that even making-based learning also has a strong verbal element to it. However, verbal language alone does not appear to be adequate for a comprehensive language of touch. Graduate designers-makers’ descriptive practices combined non-verbal manipulation within verbal accounts. We thus argue that haptic vocabularies do not simply describe material qualities, but rather are situated competences that physically demonstrate the presence of haptic qualities. Such competencies are more important than groups of verbal vocabularies in isolation. Design support for developing and extending haptic competences must take this wide range of considerations into account to comprehensively improve designers’ capabilities