Semantic text mining support for lignocellulose research

Biofuels produced from biomass are considered to be promising sustainable alternatives to fossil fuels. The conversion of lignocellulose into fermentable sugars for biofuels production requires the use of enzyme cocktails that can efficiently and economically hydrolyze lignocellulosic biomass. As many fungi naturally break down lignocellulose, the identification and characterization of the enzymes involved is a key challenge in the research and development of biomass-derived products and fuels. One approach to meeting this challenge is to mine the rapidly-expanding repertoire of microbial genomes for enzymes with the appropriate catalytic properties. Semantic technologies, including natural language processing, ontologies, semantic Web services and Web-based collaboration tools, promise to support users in handling complex data, thereby facilitating knowledge-intensive tasks. An ongoing challenge is to select the appropriate technologies and combine them in a coherent system that brings measurable improvements to the users. We present our ongoing development of a semantic infrastructure in support of genomics-based lignocellulose research. Part of this effort is the automated curation of knowledge from information on fungal enzymes that is available in the literature and genome resources. Working closely with fungal biology researchers who manually curate the existing literature, we developed ontological natural language processing pipelines integrated in a Web-based interface to assist them in two main tasks: mining the literature for relevant knowledge, and at the same time providing rich and semantically linked information

CHORUS Deliverable 2.2: Second report - identification of multi-disciplinary key issues for gap analysis toward EU multimedia search engines roadmap

After addressing the state-of-the-art during the first year of Chorus and establishing the existing landscape in multimedia search engines, we have identified and analyzed gaps within European research effort during our second year. In this period we focused on three directions, notably technological issues, user-centred issues and use-cases and socio- economic and legal aspects. These were assessed by two central studies: firstly, a concerted vision of functional breakdown of generic multimedia search engine, and secondly, a representative use-cases descriptions with the related discussion on requirement for technological challenges. Both studies have been carried out in cooperation and consultation with the community at large through EC concertation meetings (multimedia search engines cluster), several meetings with our Think-Tank, presentations in international conferences, and surveys addressed to EU projects coordinators as well as National initiatives coordinators. Based on the obtained feedback we identified two types of gaps, namely core technological gaps that involve research challenges, and “enablers”, which are not necessarily technical research challenges, but have impact on innovation progress. New socio-economic trends are presented as well as emerging legal challenges

Smart Sensor Webs For Environmental Monitoring Integrating Ogc Standards

Sensor webs are the most recent generation of data acquisition systems. The research presented looks at the concept of sensor webs from three perspectives: node, user, and data. These perspectives are different but are nicely complementary, and all extend an enhanced, usually wireless, sensor network. From the node perspective, sensor nodes collaborate in response to environmental phenomena in intelligent ways; this is referred to as the collaborative aspect. From the user perspective, a sensor web makes its sensor nodes and resources accessible via the WWW (World Wide Web); this is referred to as the accessible aspect. From the data perspective, sensor data is annotated with metadata to produce contextual information; this is referred to as the semantic aspect. A prototype that is a sensor web in all three senses has been developed. The prototype demonstrates theability of managing information in different knowledge domains. From the low-level weather data, information about higher-level weather concepts can be inferred and transferred to other knowledge domains, such as specific human activities. This produces an interesting viewpoint of situation awareness in the scope of traditional weather data

Towards automated composition of convergent services: a survey

A convergent service is defined as a service that exploits the convergence of communication networks and at the same time takes advantage of features of the Web. Nowadays, building up a convergent service is not trivial, because although there are significant approaches that aim to automate the service composition at different levels in the Web and Telecom domains, selecting the most appropriate approach for specific case studies is complex due to the big amount of involved information and the lack of technical considerations. Thus, in this paper, we identify the relevant phases for convergent service composition and explore the existing approaches and their associated technologies for automating each phase. For each technology, the maturity and results are analysed, as well as the elements that must be considered prior to their application in real scenarios. Furthermore, we provide research directions related to the convergent service composition phases

POLICY-BASED MIDDLEWARE FOR MOBILE CLOUD COMPUTING

Mobile devices are the dominant interface for interacting with online services as well as an efficient platform for cloud data consumption. Cloud computing allows the delivery of applications/functionalities as services over the internet and provides the software/hardware infrastructure to host these services in a scalable manner. In mobile cloud computing, the apps running on the mobile device use cloud hosted services to overcome resource constraints of the host device. This approach allows mobile devices to outsource the resource-consuming tasks. Furthermore, as the number of devices owned by a single user increases, there is the growing demand for cross-platform application deployment to ensure a consistent user experience. However, the mobile devices communicate through unstable wireless networks, to access the data and services hosted in the cloud. The major challenges that mobile clients face when accessing services hosted in the cloud, are network latency and synchronization of data. To address the above mentioned challenges, this research proposed an architecture which introduced a policy-based middleware that supports user to access cloud hosted digital assets and services via an application across multiple mobile devices in a seamless manner. The major contribution of this thesis is identifying different information, used to configure the behavior of the middleware towards reliable and consistent communication among mobile clients and the cloud hosted services. Finally, the advantages of the using policy-based middleware architecture are illustrated by experiments conducted on a proof-of-concept prototype

UBIDEV: a homogeneous service framework for pervasive computing environments

This dissertation studies the heterogeneity problem of pervasive computing system from the viewpoint of an infrastructure aiming to provide a service-oriented application model. From Distributed System passing through mobile computing, pervasive computing is presented as a step forward in ubiquitous availability of services and proliferation of interacting autonomous entities. To better understand the problems related to the heterogeneous and dynamic nature of pervasive computing environments, we need to analyze the structure of a pervasive computing system from its physical and service dimension. The physical dimension describes the physical environment together wit the technology infrastructure that characterizes the interactions and the relations within the environment; the service dimension represents the services (being them software or not) the environment is able to provide [Nor99]. To better separate the constrains and the functionalities of a pervasive computing system, this dissertation classifies it in terms of resources, context, classification, services, coordination and application. UBIDEV, as the key result of this dissertation, introduces a unified model helping the design and the implementation of applications for heterogeneous and dynamic environments. This model is composed of the following concepts: • Resource: all elements of the environment that are manipulated by the application, they are the atomic abstraction unit of the model. • Context: all information coming from the environment that is used by the application to adapts its behavior. Context contains resources and services and defines their role in the application. • Classification: the environment is classified according to the application ontology in order to ground the generic conceptual model of the application to the specific environment. It defines the basic semantic level of interoperability. • Service: the functionalities supported by the system; each service manipulates one or more resources. Applications are defined as a coordination and adaptation of services. • Coordination: all aspects related to service composition and execution as well as the use of the contextual information are captured by the coordination concept. • Application Ontology: represents the viewpoint of the application on the specific context; it defines the high level semantic of resources, services and context. Applying the design paradigm proposed by UBIDEV, allows to describe applications according to a Service Oriented Architecture[Bie02], and to focus on application functionalities rather than their relations with the physical devices. Keywords: pervasive computing, homogenous environment, service-oriented, heterogeneity problem, coordination model, context model, resource management, service management, application interfaces, ontology, semantic services, interaction logic, description logic.Questa dissertazione studia il problema della eterogeneit`a nei sistemi pervasivi proponendo una infrastruttura basata su un modello orientato ai servizi. I sistemi pervasivi sono presentati come un’evoluzione naturale dei sistemi distribuiti, passando attraverso mobile computing, grazie ad una disponibilit`a ubiqua di servizi (sempre, ovunque ed in qualunque modo) e ad loro e con l’ambiente stesso. Al fine di meglio comprendere i problemi legati allintrinseca eterogeneit`a dei sistemi pervasivi, dobbiamo prima descrivere la struttura fondamentale di questi sistemi classificandoli attraverso la loro dimensione fisica e quella dei loro servizi. La dimensione fisica descrive l’ambiente fisico e tutti i dispositivi che fanno parte del contesto della applicazione. La dimensione dei servizi descrive le funzionalit`a (siano esse software o no) che l’ambiente `e in grado di fornire [Nor99]. I sistemi pervasivi vengono cos`ı classificati attraverso una metrica pi `u formale del tipo risorse, contesto, servizi, coordinazione ed applicazione. UBIDEV, come risultato di questa dissertazione, introduce un modello uniforme per la descrizione e lo sviluppo di applicazioni in ambienti dinamici ed eterogenei. Il modello `e composto dai seguenti concetti di base: • Risorse: gli elementi dell’ambiente fisico che fanno parte del modello dellapplicazione. Questi rappresentano l’unit`a di astrazione atomica di tutto il modello UBIDEV. • Contesto: le informazioni sullo stato dell’ambiente che il sistema utilizza per adattare il comportamento dell’applicazione. Il contesto include informazioni legate alle risorse, ai servizi ed alle relazioni che li legano. • Classificazione: l’ambiente viene classificato sulla base di una ontologia che rappresenta il punto di accordo a cui tutti i moduli di sistema fanno riferimento. Questa classificazione rappresenta il modello concettuale dell’applicazione che si riflette sull’intero ambiente. Si definisce cos`ı la semantica di base per tutto il sistema. • Servizi: le funzionalit`a che il sistema `e in grado di fornire; ogni servizio `e descritto in termini di trasformazione di una o pi `u risorse. Le applicazioni sono cos`ı definite in termini di cooperazione tra servizi autonomi. • Coordinazione: tutti gli aspetti legati alla composizione ed alla esecuzione di servizi cos`ı come l’elaborazione dell’informazione contestuale. • Ontologia dell’Applicazione: rappresenta il punto di vista dell’applicazione; definisce la semantica delle risorse, dei servizi e dell’informazione contestuale. Applicando il paradigma proposto da UBIDEV, si possono descrivere applicazioni in accordo con un modello Service-oriented [Bie02] ed, al tempo stesso, ridurre l’applicazione stessa alle sue funzionalit`a di alto livello senza intervenire troppo su come queste funzionalit` a devono essere realizzate dalle singole componenti fisiche

Making linked-data accessible: A review

Linked-Data (LD) is a paradigm that utilises the RDF triplestore to describe numerous pieces of knowledge linked together. When an entity is retrieved in LD, its associated data becomes instantly obtainable. SPARQL is the query language that allows users to access LD. On the other hand, SPARQL has a complicated syntax that necessitates previous knowledge. Thus, in order to encourage the end-users to use LD, it is crucial to allow them to obtain the data efficiently, in addition to improving their overall experience. Instead of manually constructing SPARQL queries, this paper investigates and reviews existing methods in which LD can be accessed using various tools and techniques, including query builders, visualisation approaches, and several LD applications. We then identify gaps within the literature and highlight future research directions

ubiSOAP: A Service Oriented Middleware for Ubiquitous Networking

International audienceThe computing and networking capacities of today's wireless portable devices allow for ubiquitous services, which are seamlessly networked. Indeed, wireless handheld devices now embed the necessary resources to act as both service clients and providers. However, the ubiquitous networking of services remains challenged by the inherent mobility and resource constraints of the devices, which make services a priori highly volatile. This paper discusses the design, implementation and experimentation of the ubiSOAP service-oriented middleware, which leverages wireless networking capacities to effectively enable the ubiquitous networking of services. ubiSOAP specifically defines a layered communication middleware that underlies standard SOAP-based middleware, hence supporting legacy Web Services while exploiting nowadays ubiquitous connectivity