The Markov blankets of life: autonomy, active inference and the free energy principle

This work addresses the autonomous organization of biological systems. It does so by considering the boundaries of biological systems, from individual cells to Home sapiens, in terms of the presence of Markov blankets under the active inference scheme—a corollary of the free energy principle. A Markov blanket defines the boundaries of a system in a statistical sense. Here we consider how a collective of Markov blankets can self-assemble into a global system that itself has a Markov blanket; thereby providing an illustration of how autonomous systems can be understood as having layers of nested and self-sustaining boundaries. This allows us to show that: (i) any living system is a Markov blanketed system and (ii) the boundaries of such systems need not be co-extensive with the biophysical boundaries of a living organism. In other words, autonomous systems are hierarchically composed of Markov blankets of Markov blankets—all the way down to individual cells, all the way up to you and me, and all the way out to include elements of the local environment

Mobile Computing in Digital Ecosystems: Design Issues and Challenges

In this paper we argue that the set of wireless, mobile devices (e.g., portable telephones, tablet PCs, GPS navigators, media players) commonly used by human users enables the construction of what we term a digital ecosystem, i.e., an ecosystem constructed out of so-called digital organisms (see below), that can foster the development of novel distributed services. In this context, a human user equipped with his/her own mobile devices, can be though of as a digital organism (DO), a subsystem characterized by a set of peculiar features and resources it can offer to the rest of the ecosystem for use from its peer DOs. The internal organization of the DO must address issues of management of its own resources, including power consumption. Inside the DO and among DOs, peer-to-peer interaction mechanisms can be conveniently deployed to favor resource sharing and data dissemination. Throughout this paper, we show that most of the solutions and technologies needed to construct a digital ecosystem are already available. What is still missing is a framework (i.e., mechanisms, protocols, services) that can support effectively the integration and cooperation of these technologies. In addition, in the following we show that that framework can be implemented as a middleware subsystem that enables novel and ubiquitous forms of computation and communication. Finally, in order to illustrate the effectiveness of our approach, we introduce some experimental results we have obtained from preliminary implementations of (parts of) that subsystem.Comment: Proceedings of the 7th International wireless Communications and Mobile Computing conference (IWCMC-2011), Emergency Management: Communication and Computing Platforms Worksho

Action and behavior: a free-energy formulation

We have previously tried to explain perceptual inference and learning under a free-energy principle that pursues Helmholtz’s agenda to understand the brain in terms of energy minimization. It is fairly easy to show that making inferences about the causes of sensory data can be cast as the minimization of a free-energy bound on the likelihood of sensory inputs, given an internal model of how they were caused. In this article, we consider what would happen if the data themselves were sampled to minimize this bound. It transpires that the ensuing active sampling or inference is mandated by ergodic arguments based on the very existence of adaptive agents. Furthermore, it accounts for many aspects of motor behavior; from retinal stabilization to goal-seeking. In particular, it suggests that motor control can be understood as fulfilling prior expectations about proprioceptive sensations. This formulation can explain why adaptive behavior emerges in biological agents and suggests a simple alternative to optimal control theory. We illustrate these points using simulations of oculomotor control and then apply to same principles to cued and goal-directed movements. In short, the free-energy formulation may provide an alternative perspective on the motor control that places it in an intimate relationship with perception

Unified clustering and communication protocol for wireless sensor networks

In this paper we present an energy-efficient cross layer protocol for providing application specific reservations in wireless senor networks called the “Unified Clustering and Communication Protocol ” (UCCP). Our modular cross layered framework satisfies three wireless sensor network requirements, namely, the QoS requirement of heterogeneous applications, energy aware clustering and data forwarding by relay sensor nodes. Our unified design approach is motivated by providing an integrated and viable solution for self organization and end-to-end communication is wireless sensor networks. Dynamic QoS based reservation guarantees are provided using a reservation-based TDMA approach. Our novel energy-efficient clustering approach employs a multi-objective optimization technique based on OR (operations research) practices. We adopt a simple hierarchy in which relay nodes forward data messages from cluster head to the sink, thus eliminating the overheads needed to maintain a routing protocol. Simulation results demonstrate that UCCP provides an energy-efficient and scalable solution to meet the application specific QoS demands in resource constrained sensor nodes. Index Terms — wireless sensor networks, unified communication, optimization, clustering and quality of service

Identifying "communities" within energy landscapes

Potential energy landscapes can be represented as a network of minima linked by transition states. The community structure of such networks has been obtained for a series of small Lennard-Jones clusters. This community structure is compared to the concept of funnels in the potential energy landscape. Two existing algorithms have been used to find community structure, one involving removing edges with high betweenness, the other involving optimization of the modularity. The definition of the modularity has been refined, making it more appropriate for networks such as these where multiple edges and self-connections are not included. The optimization algorithm has also been improved, using Monte Carlo methods with simulated annealing and basin hopping, both often used successfully in other optimization problems. In addition to the small clusters, two examples with known heterogeneous landscapes, LJ_13 with one labelled atom and LJ_38, were studied with this approach. The network methods found communities that are comparable to those expected from landscape analyses. This is particularly interesting since the network model does not take any barrier heights or energies of minima into account. For comparison, the network associated with a two-dimensional hexagonal lattice is also studied and is found to have high modularity, thus raising some questions about the interpretation of the community structure associated with such partitions.Comment: 13 pages, 11 figure

Optimizing Cycle Exercise Performance During Normobaric Hypoxia Exposure

Introduction: The purpose of the present study was to examine whether implementing factors of OPTIMAL Theory: Enhanced Expectancies (EE), Autonomy Support (AS), and External Focus (EF) during a cycle exercise bout at a simulated altitude of 21,000 feet elevation had an effect on exercise performance and EPOC response in comparison to a control condition. Methods: Sixteen participants (n = 8 women, n = 8 men) completed resting oxygen measurements (resting metabolic rate) between 6:00 A.M. and 8:00 A.M. Cycle exercise to fatigue at a constant workload was performed (100 W) while breathing air with reduced oxygen content to simulate exercising at altitude (9.4% fraction of oxygen, equivalent of 6401 m above sea level). All participants performed under two conditions, an optimized and a control condition. The order of conditions were counterbalanced. Following cycle to fatigue protocol, participants were reconnected to the metabolic analysis system and instructed to sit quietly until they returned to their baseline oxygen values (EPOC duration). EPOC magnitude was determined by adding up the net oxygen consumption for every minute during the EPOC duration. Data analysis consisted of paired t-tests. Results: In summary, the results of this study reveal that cycle exercise performance between both conditions was significant, p = .03. Performance outcome measures included duration of cycle exercise to fatigue and mean watts (W). Participants were able to cycle longer in the optimized condition relative to the control, with exercise carried out at the same absolute workload. EPOC duration and magnitude in participants (N = 16) who performed cycling exercise at 100 W under simulated altitude of 6401 m (21,001 ft) to fatigue, resulted in no statistically significant difference between the following optimized and control conditions. Therefore, despite longer cycle exercise duration in the optimized condition, EPOC duration and magnitude in both conditions was not significantly different. Discussion: The present findings adds to evidence that key variables in the OPTIMAL theory influence energy expenditure, enhance movement efficiency, and reduce oxygen consumption. To the best of our knowledge, this is the first study to investigate aerobic exercise performance and EPOC response where all three variables in OPTIMAL theory are applied consecutively during exercise. Thus, further investigation is necessary to examine the physiological parameters of other exercise intensities to asses if similar results are produced

Where there is life there is mind: In support of a strong life-mind continuity thesis

This paper considers questions about continuity and discontinuity between life and mind. It begins by examining such questions from the perspective of the free energy principle (FEP). The FEP is becoming increasingly influential in neuroscience and cognitive science. It says that organisms act to maintain themselves in their expected biological and cognitive states, and that they can do so only by minimizing their free energy given that the long-term average of free energy is entropy. The paper then argues that there is no singular interpretation of the FEP for thinking about the relation between life and mind. Some FEP formulations express what we call an independence view of life and mind. One independence view is a cognitivist view of the FEP. It turns on information processing with semantic content, thus restricting the range of systems capable of exhibiting mentality. Other independence views exemplify what we call an overly generous non-cognitivist view of the FEP, and these appear to go in the opposite direction. That is, they imply that mentality is nearly everywhere. The paper proceeds to argue that non-cognitivist FEP, and its implications for thinking about the relation between life and mind, can be usefully constrained by key ideas in recent enactive approaches to cognitive science. We conclude that the most compelling account of the relationship between life and mind treats them as strongly continuous, and that this continuity is based on particular concepts of life (autopoiesis and adaptivity) and mind (basic and non-semantic)