Wavelet analysis of a Sentinel-2 time series to detect land use changes in agriculture in the Vega Alta of the Guadalquivir River: Cantillana case study (Seville)

Historically, the Vega Alta of the Guadalquivir River (southern Spain) has been an anthropized space. Over time, the dominance of latifundia agriculture has evolved towards more intensive citrus-based agriculture. In this study, wavelet algorithms applied to Sentinel-2 time series were used to determine both the expansion of citrus plantations and the level of intensification of these plantations within the municipality of Cantillana. Sentinel-2 provides comprehensive global coverage from March 2017 to the present. Our study applied a 90% power wavelet transformation for the creation of a wavelet-smoothed time series for four years of Sentinel-2 NDVI data. Based on the data, it can be stated that within our research region covering 5000 hectares of agricultural land, over a span of four years (2017 to 2020), more than 980 hectares of native vegetation and pasture were transformed into citrus orchards, giving rise, at the end of 2020, to a total area of 3250 ha. Analyzing unique spatial patterns within a wavelet-smoothed time series data is very useful for land management, as it allows land use changes to be controlled. For this reason, it becomes feasible to assess the reliability of the wavelet method using both remote sensing and GIS tools

A Review of Vegetation Phenological Metrics Extraction Using Time-Series, Multispectral Satellite Data

Vegetation dynamics and phenology play an important role in inter-annual vegetation changes in terrestrial ecosystems and are key indicators of climate-vegetation interactions, land use/land cover changes, and variation in year-to-year vegetation productivity. Satellite remote sensing data have been widely used for vegetation phenology monitoring over large geographic domains using various types of observations and methods over the past several decades. The goal of this paper is to present a detailed review of existing methods for phenology detection and emerging new techniques based on the analysis of time-series, multispectral remote sensing imagery. This paper summarizes the objective and applications of detecting general vegetation phenology stages (e.g., green onset, time or peak greenness, and growing season length) often termed “land surface phenology,” as well as more advanced methods that estimate species-specific phenological stages (e.g., silking stage of maize). Common data-processing methods, such as data smoothing, applied to prepare the time-series remote sensing observations to be applied to phenological detection methods are presented. Specific land surface phenology detection methods as well as species-specific phenology detection methods based on multispectral satellite data are then discussed. The impact of different error sources in the data on remote-sensing based phenology detection are also discussed in detail, as well as ways to reduce these uncertainties and errors. Joint analysis of multiscale observations ranging from satellite to more recent ground-based sensors is helpful for us to understand satellite-based phenology detection mechanism and extent phenology detection to regional scale in the future. Finally, emerging opportunities to further advance remote sensing of phenology is presented that includes observations from Cubesats, near-surface observations such as PhenoCams, and image data fusion techniques to improve the spatial resolution of time-series image data sets needed for phenological characterization

Mapping crop phenology using NDVI time-series derived from HJ-1 A/B data

With the availability of high frequent satellite data, crop phenology could be accurately mapped using time-series remote sensing data. Vegetation index time-series data derived from AVHRR, MODIS, and SPOT-VEGETATION images usually have coarse spatial resolution. Mapping crop phenology parameters using higher spatial resolution images (e.g., Landsat TM-like) is unprecedented. Recently launched HJ-1 A/B CCD sensors boarded on China Environment Satellite provided a feasible and ideal data source for the construction of high spatio-temporal resolution vegetation index time-series. This paper presented a comprehensive method to construct NDVI time-series dataset derived from HJ-1 A/B CCD and demonstrated its application in cropland areas. The procedures of time-series data construction included image preprocessing, signal filtering, and interpolation for daily NDVI images then the NDVI time-series could present a smooth and complete phenological cycle. To demonstrate its application, TIMESAT program was employed to extract phenology parameters of crop lands located in Guanzhong Plain, China. The small-scale test showed that the crop season start/end derived from HJ-1 A/B NDVI time-series was comparable with local agro-metrological observation. The methodology for reconstructing time-series remote sensing data had been proved feasible, though forgoing researches will improve this a lot in mapping crop phenology. Last but not least, further studies should be focused on field-data collection, smoothing method and phenology definitions using time-series remote sensing data

Near Real-Time Disturbance Detection in Terrestrial Ecosystems Using Satellite Image Time Series: Drought Detection in Somalia

Near real-time monitoring of ecosystem disturbances is critical for addressing impacts on carbon dynamics, biodiversity, and socio-ecological processes. Satellite remote sensing enables cost-effective and accurate monitoring at frequent time steps over large areas. Yet, generic methods to detect disturbances within newly captured satellite images are lacking. We propose a generic time series based disturbance detection approach by modelling stable historical behaviour to enable detection of abnormal changes within newly acquired data. Time series of vegetation greenness provide a measure for terrestrial vegetation productivity over the last decades covering the whole world and contain essential information related land cover dynamics and disturbances. Here, we assess and demonstrate the method by (1) simulating time series of vegetation greenness data from satellite data with different amount of noise, seasonality and disturbances representing a wide range of terrestrial ecosystems, (2) applying it to real satellite greenness image time series between February 2000 and July 2011 covering Somalia to detect drought related vegetation disturbances. First, simulation results illustrate that disturbances are successfully detected in near real-time while being robust for seasonality and noise. Second, major drought related disturbance corresponding with most drought stressed regions in Somalia are detected from mid 2010 onwards and confirm proof-of-concept of the method. The method can be integrated within current operational early warning systems and has the potential to detect a wide variety of disturbances (e.g. deforestation, flood damage, etc.). It can analyse in-situ or satellite data time series of biophysical indicators from local to global scale since it is fast, does not depend on thresholds or definitions and does not require time series gap filling.early warning, real-time monitoring, global change, disturbance, time series, remote sensing, vegetation and climate dynamics

Assessing spring phenology of a temperate woodland : a multiscale comparison of ground, unmanned aerial vehicle and Landsat satellite observations

PhD ThesisVegetation phenology is the study of plant natural life cycle stages. Plant phenological events are related to carbon, energy and water cycles within terrestrial ecosystems, operating from local to global scales. As plant phenology events are highly sensitive to climate fluctuations, the timing of these events has been used as an independent indicator of climate change. The monitoring of forest phenology in a cost-effective manner, at a fine spatial scale and over relatively large areas remains a significant challenge. To address this issue, unmanned aerial vehicles (UAVs) appear to be a potential new platform for forest phenology monitoring. The aim of this research is to assess the potential of UAV data to track the temporal dynamics of spring phenology, from the individual tree to woodland scale, and to cross-compare UAV results against ground and satellite observations, in order to better understand characteristics of UAV data and assess potential for use in validation of satellite-derived phenology. A time series of UAV data were acquired in tandem with an intensive ground campaign during the spring season of 2015, over Hanging Leaves Wood, Northumberland, UK. The radiometric quality of the UAV imagery acquired by two consumer-grade cameras was assessed, in terms of the ability to retrieve reflectance and Normalised Difference Vegetation Index (NDVI), and successfully validated against ground (0.84≤R2≥0.96) and Landsat (0.73≤R2≥0.89) measurements, but only NDVI resulted in stable time series. The start (SOS), middle (MOS) and end (EOS) of spring season dates were estimated at an individual tree-level using UAV time series of NDVI and Green Chromatic Coordinate (GCC), with GCC resulting in a clearer and stronger seasonal signal at a tree crown scale. UAV-derived SOS could be predicted more accurately than MOS and EOS, with an accuracy of less than 1 week for deciduous woodland and within 2 weeks for evergreen. The UAV data were used to map phenological events for individual trees across the whole woodland, demonstrating that contrasting canopy phenological events can occur within the extent of a single Landsat pixel. This accounted for the poor relationships found between UAV- and Landsat-derived phenometrics (R2<0.45) in this study. An opportunity is now available to track very fine scale land surface changes over contiguous vegetation communities, information which could improve characterization of vegetation phenology at multiple scales.The Science without Borders program, managed by CAPES-Brazil (Coordenação de Aperfeiçoamento de Pessoal de Nível Superior)

Mapping the Spatial-Temporal Dynamics of Vegetation Response Lag to Drought in a Semi-Arid Region

Drought, as an extreme climate event, affects the ecological environment for vegetation and agricultural production. Studies of the vegetative response to drought are paramount to providing scientific information for drought risk mitigation. In this paper, the spatial-temporal pattern of drought and the response lag of vegetation in Nebraska were analyzed from 2000 to 2015. Based on the long-term Daymet data set, the standard precipitation index (SPI) was computed to identify precipitation anomalies, and the Gaussian function was applied to obtain temperature anomalies. Vegetation anomaly was identified by dynamic time warping technique using a remote sensing Normalized Difference Vegetation Index (NDVI) time series. Finally, multilayer correlation analysis was applied to obtain the response lag of different vegetation types. The results show that Nebraska suffered severe drought events in 2002 and 2012. The response lag of vegetation to drought typically ranged from 30 to 45 days varying for different vegetation types and human activities (water use and management). Grasslands had the shortest response lag (~35 days), while forests had the longest lag period (~48 days). For specific crop types, the response lag of winter wheat varied among different regions of Nebraska (35–45 days), while soybeans, corn and alfalfa had similar response lag times of approximately 40 days

High-throughput phenotyping of plant leaf morphological, physiological, and biochemical traits on multiple scales using optical sensing

Acquisition of plant phenotypic information facilitates plant breeding, sheds light on gene action, and can be applied to optimize the quality of agricultural and forestry products. Because leaves often show the fastest responses to external environmental stimuli, leaf phenotypic traits are indicators of plant growth, health, and stress levels. Combination of new imaging sensors, image processing, and data analytics permits measurement over the full life span of plants at high temporal resolution and at several organizational levels from organs to individual plants to field populations of plants. We review the optical sensors and associated data analytics used for measuring morphological, physiological, and biochemical traits of plant leaves on multiple scales. We summarize the characteristics, advantages and limitations of optical sensing and data-processing methods applied in various plant phenotyping scenarios. Finally, we discuss the future prospects of plant leaf phenotyping research. This review aims to help researchers choose appropriate optical sensors and data processing methods to acquire plant leaf phenotypes rapidly, accurately, and cost-effectively

Investigation of Coastal Vegetation Dynamics and Persistence in Response to Hydrologic and Climatic Events Using Remote Sensing

Coastal Wetlands (CW) provide numerous imperative functions and provide an economic base for human societies. Therefore, it is imperative to track and quantify both short and long-term changes in these systems. In this dissertation, CW dynamics related to hydro-meteorological signals were investigated using a series of LANDSAT-derived normalized difference vegetation index (NDVI) data and hydro-meteorological time-series data in Apalachicola Bay, Florida, from 1984 to 2015. NDVI in forested wetlands exhibited more persistence compared to that for scrub and emergent wetlands. NDVI fluctuations generally lagged temperature by approximately three months, and water level by approximately two months. This analysis provided insight into long-term CW dynamics in the Northern Gulf of Mexico. Long-term studies like this are dependent on optical remote sensing data such as Landsat which is frequently partially obscured due to clouds and this can that makes the time-series sparse and unusable during meteorologically active seasons. Therefore, a multi-sensor, virtual constellation method is proposed and demonstrated to recover the information lost due to cloud cover. This method, named Tri-Sensor Fusion (TSF), produces a simulated constellation for NDVI by integrating data from three compatible satellite sensors. The visible and near-infrared (VNIR) bands of Landsat-8 (L8), Sentinel-2, and the Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) were utilized to map NDVI and to compensate each satellite sensor\u27s shortcomings in visible coverage area. The quantitative comparison results showed a Root Mean Squared Error (RMSE) and Coefficient of Determination (R2) of 0.0020 sr-1 and 0.88, respectively between true observed and fused L8 NDVI. Statistical test results and qualitative performance evaluation suggest that TSF was able to synthesize the missing pixels accurately in terms of the absolute magnitude of NDVI. The fusion improved the spatial coverage of CWs reasonably well and ultimately increases the continuity of NDVI data for long term studies

Wavelet analysis of a Sentinel-2 time series to detect land use changes in agriculture in the Vega Alta of the Guadalquivir River: Cantillana case study (Seville)

Historically, the Vega Alta of the Guadalquivir River (southern Spain) has been an anthropized space. Over time, the dominance of latifundia agriculture has evolved towards more intensive citrus-based agriculture. In this study, wavelet algorithms applied to Sentinel-2 time series were used to determine both the expansion of citrus plantations and the level of intensification of these plantations within the municipality of Cantillana. Sentinel-2 provides comprehensive global coverage from March 2017 to the present. Our study applied a 90% power wavelet transformation for the creation of a wavelet-smoothed time series for four years of Sentinel-2 NDVI data. Based on the data, it can be stated that within our research region covering 5000 hectares of agricultural land, over a span of four years (2017 to 2020), more than 980 hectares of native vegetation and pasture were transformed into citrus orchards, giving rise, at the end of 2020, to a total area of 3250 ha. Analyzing unique spatial patterns within a wavelet-smoothed time series data is very useful for land management, as it allows land use changes to be controlled. For this reason, it becomes feasible to assess the reliability of the wavelet method using both remote sensing and GIS tools

ENHANCING CONSERVATION WITH HIGH RESOLUTION PRODUCTIVITY DATASETS FOR THE CONTERMINOUS UNITED STATES

Human driven alteration of the earth’s terrestrial surface is accelerating through land use changes, intensification of human activity, climate change, and other anthropogenic pressures. These changes occur at broad spatio-temporal scales, challenging our ability to effectively monitor and assess the impacts and subsequent conservation strategies. While satellite remote sensing (SRS) products enable monitoring of the earth’s terrestrial surface continuously across space and time, the practical applications for conservation and management of these products are limited. Often the processes driving ecological change occur at fine spatial resolutions and are undetectable given the resolution of available datasets. Additionally, the links between SRS data and ecologically meaningful metrics are weak. Recent advances in cloud computing technology along with the growing record of high resolution SRS data enable the development of SRS products that quantify ecologically meaningful variables at relevant scales applicable for conservation and management. The focus of my dissertation is to improve the applicability of terrestrial gross and net primary productivity (GPP/NPP) datasets for the conterminous United States (CONUS). In chapter one, I develop a framework for creating high resolution datasets of vegetation dynamics. I use the entire archive of Landsat 5, 7, and 8 surface reflectance data and a novel gap filling approach to create spatially continuous 30 m, 16-day composites of the normalized difference vegetation index (NDVI) from 1986 to 2016. In chapter two, I integrate this with other high resolution datasets and the MOD17 algorithm to create the first high resolution GPP and NPP datasets for CONUS. I demonstrate the applicability of these products for conservation and management, showing the improvements beyond currently available products. In chapter three, I utilize this dataset to evaluate the relationships between land ownership and terrestrial production across the CONUS domain. The main results of this work are three publically available datasets: 1) 30 m Landsat NDVI; 2) 250 m MODIS based GPP and NPP; and 3) 30 m Landsat based GPP and NPP. My goal is that these products prove useful for the wider scientific, conservation, and land management communities as we continue to strive for better conservation and management practices