Searching the World-Wide-Web using nucleotide and peptide sequences

*Background:* No approaches have yet been developed to allow instant searching of the World-Wide-Web by just entering a string of sequence data. Though general search engines can be tuned to accept ‘processed’ queries, the burden of preparing such ‘search strings’ simply defeats the purpose of quickly locating highly relevant information. Unlike ‘sequence similarity’ searches that employ dedicated algorithms (like BLAST) to compare an input sequence from defined databases, a direct ‘sequence based’ search simply locates quick and relevant information about a blunt piece of nucleotide or peptide sequence. This approach is particularly invaluable to all biomedical researchers who would often like to enter a sequence and quickly locate any pertinent information before proceeding to carry out detailed sequence alignment. 

*Results:* Here, we describe the theory and implementation of a web-based front-end for a search engine, like Google, which accepts sequence fragments and interactively retrieves a collection of highly relevant links and documents, in real-time. e.g. flat files like patent records, privately hosted sequence documents and regular databases. 

*Conclusions:* The importance of this simple yet highly relevant tool will be evident when with a little bit of tweaking, the tool can be engineered to carry out searches on all kinds of hosted documents in the World-Wide-Web.

*Availability:* Instaseq is free web based service that can be accessed by visiting the following hyperlink on the WWW
http://instaseq.georgetown.edu 
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Peer to Peer Information Retrieval: An Overview

Peer-to-peer technology is widely used for file sharing. In the past decade a number of prototype peer-to-peer information retrieval systems have been developed. Unfortunately, none of these have seen widespread real- world adoption and thus, in contrast with file sharing, information retrieval is still dominated by centralised solutions. In this paper we provide an overview of the key challenges for peer-to-peer information retrieval and the work done so far. We want to stimulate and inspire further research to overcome these challenges. This will open the door to the development and large-scale deployment of real-world peer-to-peer information retrieval systems that rival existing centralised client-server solutions in terms of scalability, performance, user satisfaction and freedom

Summarizing information from Web sites on distributed power generation and alternative energy development

The World Wide Web (WWW) has become a huge repository of information and knowledge, and an essential channel for information exchange. Many sites and thousands of pages of information on distributed power generation and alternate energy development are being added or modified constantly and the task of finding the most appropriate information is getting difficult. While search engines are capable to return a collection of links according to key terms and some forms of ranking mechanism, it is still necessary to access the Web page and navigate through the site in order to find the information. This paper proposes an interactive summarization framework called iWISE to facilitate the process by providing a summary of the information on the Web site. The proposed approach makes use of graphical visualization, tag clouds and text summarization. A number of cases are presented and compared in this paper with a discussion on future work

A Multi-Relational Network to Support the Scholarly Communication Process

The general pupose of the scholarly communication process is to support the creation and dissemination of ideas within the scientific community. At a finer granularity, there exists multiple stages which, when confronted by a member of the community, have different requirements and therefore different solutions. In order to take a researcher's idea from an initial inspiration to a community resource, the scholarly communication infrastructure may be required to 1) provide a scientist initial seed ideas; 2) form a team of well suited collaborators; 3) located the most appropriate venue to publish the formalized idea; 4) determine the most appropriate peers to review the manuscript; and 5) disseminate the end product to the most interested members of the community. Through the various delinieations of this process, the requirements of each stage are tied soley to the multi-functional resources of the community: its researchers, its journals, and its manuscritps. It is within the collection of these resources and their inherent relationships that the solutions to scholarly communication are to be found. This paper describes an associative network composed of multiple scholarly artifacts that can be used as a medium for supporting the scholarly communication process.Comment: keywords: digital libraries and scholarly communicatio

Methodologies for the Automatic Location of Academic and Educational Texts on the Internet

Traditionally online databases of web resources have been compiled by a human editor, or though the submissions of authors or interested parties. Considerable resources are needed to maintain a constant level of input and relevance in the face of increasing material quantity and quality, and much of what is in databases is of an ephemeral nature. These pressures dictate that many databases stagnate after an initial period of enthusiastic data entry. The solution to this problem would seem to be the automatic harvesting of resources, however, this process necessitates the automatic classification of resources as ‘appropriate’ to a given database, a problem only solved by complex text content analysis. This paper outlines the component methodologies necessary to construct such an automated harvesting system, including a number of novel approaches. In particular this paper looks at the specific problems of automatically identifying academic research work and Higher Education pedagogic materials. Where appropriate, experimental data is presented from searches in the field of Geography as well as the Earth and Environmental Sciences. In addition, appropriate software is reviewed where it exists, and future directions are outlined

Methodologies for the Automatic Location of Academic and Educational Texts on the Internet

Traditionally online databases of web resources have been compiled by a human editor, or though the submissions of authors or interested parties. Considerable resources are needed to maintain a constant level of input and relevance in the face of increasing material quantity and quality, and much of what is in databases is of an ephemeral nature. These pressures dictate that many databases stagnate after an initial period of enthusiastic data entry. The solution to this problem would seem to be the automatic harvesting of resources, however, this process necessitates the automatic classification of resources as ‘appropriate’ to a given database, a problem only solved by complex text content analysis. This paper outlines the component methodologies necessary to construct such an automated harvesting system, including a number of novel approaches. In particular this paper looks at the specific problems of automatically identifying academic research work and Higher Education pedagogic materials. Where appropriate, experimental data is presented from searches in the field of Geography as well as the Earth and Environmental Sciences. In addition, appropriate software is reviewed where it exists, and future directions are outlined

When Things Matter: A Data-Centric View of the Internet of Things

With the recent advances in radio-frequency identification (RFID), low-cost wireless sensor devices, and Web technologies, the Internet of Things (IoT) approach has gained momentum in connecting everyday objects to the Internet and facilitating machine-to-human and machine-to-machine communication with the physical world. While IoT offers the capability to connect and integrate both digital and physical entities, enabling a whole new class of applications and services, several significant challenges need to be addressed before these applications and services can be fully realized. A fundamental challenge centers around managing IoT data, typically produced in dynamic and volatile environments, which is not only extremely large in scale and volume, but also noisy, and continuous. This article surveys the main techniques and state-of-the-art research efforts in IoT from data-centric perspectives, including data stream processing, data storage models, complex event processing, and searching in IoT. Open research issues for IoT data management are also discussed

Enhance Crawler For Efficiently Harvesting Deep Web Interfaces

Scenario in web is varying quickly and size of web resources is rising, efficiency has become a challenging problem for crawling such data. The hidden web content is the data that cannot be indexed by search engines as they always stay behind searchable web interfaces. The proposed system purposes to develop a framework for focused crawler for efficient gathering hidden web interfaces. Firstly Crawler performs site-based searching for getting center pages with the help of web search tools to avoid from visiting additional number of pages. To get more specific results for a focused crawler, projected crawler ranks websites by giving high priority to more related ones for a given search. Crawler accomplishes fast in-site searching via watching for more relevant links with an adaptive link ranking. Here we have incorporated spell checker for giving correct input and apply reverse searching with incremental site prioritizing for wide-ranging coverage of hidden web sites