IMP Science Gateway: from the Portal to the Hub of Virtual Experimental Labs in Materials Science

"Science gateway" (SG) ideology means a user-friendly intuitive interface between scientists (or scientific communities) and different software components + various distributed computing infrastructures (DCIs) (like grids, clouds, clusters), where researchers can focus on their scientific goals and less on peculiarities of software/DCI. "IMP Science Gateway Portal" (http://scigate.imp.kiev.ua) for complex workflow management and integration of distributed computing resources (like clusters, service grids, desktop grids, clouds) is presented. It is created on the basis of WS-PGRADE and gUSE technologies, where WS-PGRADE is designed for science workflow operation and gUSE - for smooth integration of available resources for parallel and distributed computing in various heterogeneous distributed computing infrastructures (DCI). The typical scientific workflows with possible scenarios of its preparation and usage are presented. Several typical use cases for these science applications (scientific workflows) are considered for molecular dynamics (MD) simulations of complex behavior of various nanostructures (nanoindentation of graphene layers, defect system relaxation in metal nanocrystals, thermal stability of boron nitride nanotubes, etc.). The user experience is analyzed in the context of its practical applications for MD simulations in materials science, physics and nanotechnologies with available heterogeneous DCIs. In conclusion, the "science gateway" approach - workflow manager (like WS-PGRADE) + DCI resources manager (like gUSE)- gives opportunity to use the SG portal (like "IMP Science Gateway Portal") in a very promising way, namely, as a hub of various virtual experimental labs (different software components + various requirements to resources) in the context of its practical MD applications in materials science, physics, chemistry, biology, and nanotechnologies.Comment: 6 pages, 5 figures, 3 tables; 6th International Workshop on Science Gateways, IWSG-2014 (Dublin, Ireland, 3-5 June, 2014). arXiv admin note: substantial text overlap with arXiv:1404.545

OGC SWE-based Data Acquisition System Development for EGIM on EMSODEV EU Project

The EMSODEV[1] (European Multidisciplinary Seafloor and water column Observatory DEVelopment) is an EU project whose general objective is to set up the full implementation and operation of the EMSO distributed Research Infrastructure (RI), through the development, testing and deployment of an EMSO Generic Instrument Module (EGIM). This research infrastructure will provide accurate records on marine environmental changes from distributed local nodes around Europe. These observations are critical to respond accurately to the social and scientific challenges such as climate change, changes in marine ecosystems, and marine hazards. In this paper we present the design and development of the EGIM data acquisition system. EGIM is able to operate on any EMSO node, mooring line, sea bed station, cabled or non-cabled and surface buoy. In fact a central function of EGIM within the EMSO infrastructure is to have a number of ocean locations where the same set of core variables are measured homogeneously: using the same hardware, same sensor references, same qualification methods, same calibration methods, same data format and access, and same maintenance procedures.Peer ReviewedPostprint (published version

NASA access mechanism: Graphical user interface information retrieval system

Access to online information sources of aerospace, scientific, and engineering data, a mission focus for NASA's Scientific and Technical Information Program, has always been limited to factors such as telecommunications, query language syntax, lack of standardization in the information, and the lack of adequate tools to assist in searching. Today, the NASA STI Program's NASA Access Mechanism (NAM) prototype offers a solution to these problems by providing the user with a set of tools that provide a graphical interface to remote, heterogeneous, and distributed information in a manner adaptable to both casual and expert users. Additionally, the NAM provides access to many Internet-based services such as Electronic Mail, the Wide Area Information Servers system, Peer Locating tools, and electronic bulletin boards

Data acquisition system development for EGIM on EMSODEV EU Project

The EMSODEV1 (European Multidisciplinary Seafloor and water-- column Observatory DEVelopment) is a UE project whose general objective is to set up the full implementation and operation of the EMSO distributed Research Infrastructure (RI), through the development, testing and deployment of an EMSO Generic Instrument Module (EGIM). The EGIM module will measure various ocean parameters in a long-term consistent, accurate and comparable manner. These measurements are critical to respond accurately to the social and scientific challenges such as climate change, changes in marine ecosystems, and marine hazards. Here we present the current status of the EGIM data acquisition system development.Peer ReviewedPostprint (published version