Linked data and linked APIs: similarities, differences, and challenges

In an often retweeted Twitter post, entrepreneur and software architect Inge Henriksen described the relation of Web 1.0 to Web 3.0 as: “Web 1.0 connected humans with machines. Web 2.0 connected humans with humans. Web 3.0 connects machines with machines.” On the one hand, an incredible amount of valuable data is described by billions of triples, machine-accessible and interconnected thanks to the promises of Linked Data. On the other hand, rest is a scalable, resourceoriented architectural style that, like the Linked Data vision, recognizes the importance of links between resources. Hypermedia apis are resources, too—albeit dynamic ones—and unfortunately, neither Linked Data principles, nor the rest-implied self-descriptiveness of hypermedia apis sufficiently describe them to allow for long-envisioned realizations like automatic service discovery and composition. We argue that describing inter-resource links—similarly to what the Linked Data movement has done for data—is the key to machine-driven consumption of apis. In this paper, we explain how the description format restdesc captures the functionality of apis by explaining the effect of dynamic interactions, effectively complementing the Linked Data vision.Peer ReviewedPostprint (author's final draft

From Big Data to Big Displays: High-Performance Visualization at Blue Brain

Blue Brain has pushed high-performance visualization (HPV) to complement its HPC strategy since its inception in 2007. In 2011, this strategy has been accelerated to develop innovative visualization solutions through increased funding and strategic partnerships with other research institutions. We present the key elements of this HPV ecosystem, which integrates C++ visualization applications with novel collaborative display systems. We motivate how our strategy of transforming visualization engines into services enables a variety of use cases, not only for the integration with high-fidelity displays, but also to build service oriented architectures, to link into web applications and to provide remote services to Python applications.Comment: ISC 2017 Visualization at Scale worksho

The INCF Digital Atlasing Program: Report on Digital Atlasing Standards in the Rodent Brain

The goal of the INCF Digital Atlasing Program is to provide the vision and direction necessary to make the rapidly growing collection of multidimensional data of the rodent brain (images, gene expression, etc.) widely accessible and usable to the international research community. This Digital Brain Atlasing Standards Task Force was formed in May 2008 to investigate the state of rodent brain digital atlasing, and formulate standards, guidelines, and policy recommendations.

Our first objective has been the preparation of a detailed document that includes the vision and specific description of an infrastructure, systems and methods capable of serving the scientific goals of the community, as well as practical issues for achieving
the goals. This report builds on the 1st INCF Workshop on Mouse and Rat Brain Digital Atlasing Systems (Boline et al., 2007, _Nature Preceedings_, doi:10.1038/npre.2007.1046.1) and includes a more detailed analysis of both the current state and desired state of digital atlasing along with specific recommendations for achieving these goals