Aggregation protocols in light of reliable communication

Aggregation protocols allow for distributed lightweight computations deployed on ad-hoc networks in a peer-to-peer fashion. Due to reliance on wireless technology, the communication medium is often hostile which makes such protocols susceptible to correctness and performance issues. In this paper, we study the behavior of aggregation protocols when subject to communication failures: message loss, duplication, and network partitions. We show that resolving communication failures at the communication layer, through a simple reliable communication layer, reduces the overhead of using alternative fault tolerance techniques at upper layers, and also preserves the original accuracy and simplicity of protocols. The empirical study we drive shows that tradeoffs exist across various aggregation protocols, and there is no one-size-fits-all protocol.- The second author is supported by SMILES track of TEC4Growth project (NORTE-01-0145-FEDER-000020), and the third and forth authors are supported by EU H2020 LightKone project (732505)

Resilient gossip-inspired all-reduce algorithms for high-performance computing - Potential, limitations, and open questions

We investigate the usefulness of gossip-based reduction algorithms in a high-performance computing (HPC) context. We compare them to state-of-the-art deterministic parallel reduction algorithms in terms of fault tolerance and resilience against silent data corruption (SDC) as well as in terms of performance and scalability. New gossip-based reduction algorithms are proposed, which significantly improve the state-of-the-art in terms of resilience against SDC. Moreover, a new gossip-inspired reduction algorithm is proposed, which promises a much more competitive runtime performance in an HPC context than classical gossip-based algorithms, in particular for low accuracy requirements.This work has been partially funded by the Spanish Ministry of Science and Innovation [contract TIN2015-65316]; by the Government of Catalonia [contracts 2014-SGR-1051, 2014-SGR-1272]; by the RoMoL ERC Advanced Grant [grant number GA 321253] and by the Vienna Science and Technology Fund (WWTF) through project ICT15-113.Peer ReviewedPostprint (author's final draft

Resiliency in numerical algorithm design for extreme scale simulations

This work is based on the seminar titled ‘Resiliency in Numerical Algorithm Design for Extreme Scale Simulations’ held March 1–6, 2020, at Schloss Dagstuhl, that was attended by all the authors. Advanced supercomputing is characterized by very high computation speeds at the cost of involving an enormous amount of resources and costs. A typical large-scale computation running for 48 h on a system consuming 20 MW, as predicted for exascale systems, would consume a million kWh, corresponding to about 100k Euro in energy cost for executing 1023 floating-point operations. It is clearly unacceptable to lose the whole computation if any of the several million parallel processes fails during the execution. Moreover, if a single operation suffers from a bit-flip error, should the whole computation be declared invalid? What about the notion of reproducibility itself: should this core paradigm of science be revised and refined for results that are obtained by large-scale simulation? Naive versions of conventional resilience techniques will not scale to the exascale regime: with a main memory footprint of tens of Petabytes, synchronously writing checkpoint data all the way to background storage at frequent intervals will create intolerable overheads in runtime and energy consumption. Forecasts show that the mean time between failures could be lower than the time to recover from such a checkpoint, so that large calculations at scale might not make any progress if robust alternatives are not investigated. More advanced resilience techniques must be devised. The key may lie in exploiting both advanced system features as well as specific application knowledge. Research will face two essential questions: (1) what are the reliability requirements for a particular computation and (2) how do we best design the algorithms and software to meet these requirements? While the analysis of use cases can help understand the particular reliability requirements, the construction of remedies is currently wide open. One avenue would be to refine and improve on system- or application-level checkpointing and rollback strategies in the case an error is detected. Developers might use fault notification interfaces and flexible runtime systems to respond to node failures in an application-dependent fashion. Novel numerical algorithms or more stochastic computational approaches may be required to meet accuracy requirements in the face of undetectable soft errors. These ideas constituted an essential topic of the seminar. The goal of this Dagstuhl Seminar was to bring together a diverse group of scientists with expertise in exascale computing to discuss novel ways to make applications resilient against detected and undetected faults. In particular, participants explored the role that algorithms and applications play in the holistic approach needed to tackle this challenge. This article gathers a broad range of perspectives on the role of algorithms, applications and systems in achieving resilience for extreme scale simulations. The ultimate goal is to spark novel ideas and encourage the development of concrete solutions for achieving such resilience holistically.Peer Reviewed"Article signat per 36 autors/es: Emmanuel Agullo, Mirco Altenbernd, Hartwig Anzt, Leonardo Bautista-Gomez, Tommaso Benacchio, Luca Bonaventura, Hans-Joachim Bungartz, Sanjay Chatterjee, Florina M. Ciorba, Nathan DeBardeleben, Daniel Drzisga, Sebastian Eibl, Christian Engelmann, Wilfried N. Gansterer, Luc Giraud, Dominik G ̈oddeke, Marco Heisig, Fabienne Jezequel, Nils Kohl, Xiaoye Sherry Li, Romain Lion, Miriam Mehl, Paul Mycek, Michael Obersteiner, Enrique S. Quintana-Ortiz, Francesco Rizzi, Ulrich Rude, Martin Schulz, Fred Fung, Robert Speck, Linda Stals, Keita Teranishi, Samuel Thibault, Dominik Thonnes, Andreas Wagner and Barbara Wohlmuth"Postprint (author's final draft

Austrian High-Performance-Computing meeting (AHPC2020)

This booklet is a collection of abstracts presented at the AHPC conference

Tuning the Computational Effort: An Adaptive Accuracy-aware Approach Across System Layers

This thesis introduces a novel methodology to realize accuracy-aware systems, which will help designers integrate accuracy awareness into their systems. It proposes an adaptive accuracy-aware approach across system layers that addresses current challenges in that domain, combining and tuning accuracy-aware methods on different system layers. To widen the scope of accuracy-aware computing including approximate computing for other domains, this thesis presents innovative accuracy-aware methods and techniques for different system layers. The required tuning of the accuracy-aware methods is integrated into a configuration layer that tunes the available knobs of the accuracy-aware methods integrated into a system

Integrating Blockchain and Fog Computing Technologies for Efficient Privacy-preserving Systems

This PhD dissertation concludes a three-year long research journey on the integration of Fog Computing and Blockchain technologies. The main aim of such integration is to address the challenges of each of these technologies, by integrating it with the other. Blockchain technology (BC) is a distributed ledger technology in the form of a distributed transactional database, secured by cryptography, and governed by a consensus mechanism. It was initially proposed for decentralized cryptocurrency applications with practically proven high robustness. Fog Computing (FC) is a geographically distributed computing architecture, in which various heterogeneous devices at the edge of network are ubiquitously connected to collaboratively provide elastic computation services. FC provides enhanced services closer to end-users in terms of time, energy, and network load. The integration of FC with BC can result in more efficient services, in terms of latency and privacy, mostly required by Internet of Things systems

Advances in Robotics, Automation and Control

The book presents an excellent overview of the recent developments in the different areas of Robotics, Automation and Control. Through its 24 chapters, this book presents topics related to control and robot design; it also introduces new mathematical tools and techniques devoted to improve the system modeling and control. An important point is the use of rational agents and heuristic techniques to cope with the computational complexity required for controlling complex systems. Through this book, we also find navigation and vision algorithms, automatic handwritten comprehension and speech recognition systems that will be included in the next generation of productive systems developed by man

Straggler-Resilient Distributed Computing

In reference to IEEE copyrighted material which is used with permission in this thesis, the IEEE does not endorse any of University of Bergen's products or services. Internal or personal use of this material is permitted. If interested in reprinting/republishing IEEE copyrighted material for advertising or promotional purposes or for creating new collective works for resale or redistribution, please go to http://www.ieee.org/publications_standards/publications/rights/rights_link.html to learn how to obtain a License from RightsLink.Utbredelsen av distribuerte datasystemer har økt betydelig de siste årene. Dette skyldes først og fremst at behovet for beregningskraft øker raskere enn hastigheten til en enkelt datamaskin, slik at vi må bruke flere datamaskiner for å møte etterspørselen, og at det blir stadig mer vanlig at systemer er spredt over et stort geografisk område. Dette paradigmeskiftet medfører mange tekniske utfordringer. En av disse er knyttet til "straggler"-problemet, som er forårsaket av forsinkelsesvariasjoner i distribuerte systemer, der en beregning forsinkes av noen få langsomme noder slik at andre noder må vente før de kan fortsette. Straggler-problemet kan svekke effektiviteten til distribuerte systemer betydelig i situasjoner der en enkelt node som opplever en midlertidig overbelastning kan låse et helt system. I denne avhandlingen studerer vi metoder for å gjøre beregninger av forskjellige typer motstandsdyktige mot slike problemer, og dermed gjøre det mulig for et distribuert system å fortsette til tross for at noen noder ikke svarer i tide. Metodene vi foreslår er skreddersydde for spesielle typer beregninger. Vi foreslår metoder tilpasset distribuert matrise-vektor-multiplikasjon (som er en grunnleggende operasjon i mange typer beregninger), distribuert maskinlæring og distribuert sporing av en tilfeldig prosess (for eksempel det å spore plasseringen til kjøretøy for å unngå kollisjon). De foreslåtte metodene utnytter redundans som enten blir introdusert som en del av metoden, eller som naturlig eksisterer i det underliggende problemet, til å kompensere for manglende delberegninger. For en av de foreslåtte metodene utnytter vi redundans for også å øke effektiviteten til kommunikasjonen mellom noder, og dermed redusere mengden data som må kommuniseres over nettverket. I likhet med straggler-problemet kan slik kommunikasjon begrense effektiviteten i distribuerte systemer betydelig. De foreslåtte metodene gir signifikante forbedringer i ventetid og pålitelighet sammenlignet med tidligere metoder.The number and scale of distributed computing systems being built have increased significantly in recent years. Primarily, that is because: i) our computing needs are increasing at a much higher rate than computers are becoming faster, so we need to use more of them to meet demand, and ii) systems that are fundamentally distributed, e.g., because the components that make them up are geographically distributed, are becoming increasingly prevalent. This paradigm shift is the source of many engineering challenges. Among them is the straggler problem, which is a problem caused by latency variations in distributed systems, where faster nodes are held up by slower ones. The straggler problem can significantly impair the effectiveness of distributed systems—a single node experiencing a transient outage (e.g., due to being overloaded) can lock up an entire system. In this thesis, we consider schemes for making a range of computations resilient against such stragglers, thus allowing a distributed system to proceed in spite of some nodes failing to respond on time. The schemes we propose are tailored for particular computations. We propose schemes designed for distributed matrix-vector multiplication, which is a fundamental operation in many computing applications, distributed machine learning—in the form of a straggler-resilient first-order optimization method—and distributed tracking of a time-varying process (e.g., tracking the location of a set of vehicles for a collision avoidance system). The proposed schemes rely on exploiting redundancy that is either introduced as part of the scheme, or exists naturally in the underlying problem, to compensate for missing results, i.e., they are a form of forward error correction for computations. Further, for one of the proposed schemes we exploit redundancy to also improve the effectiveness of multicasting, thus reducing the amount of data that needs to be communicated over the network. Such inter-node communication, like the straggler problem, can significantly limit the effectiveness of distributed systems. For the schemes we propose, we are able to show significant improvements in latency and reliability compared to previous schemes.Doktorgradsavhandlin

A computational framework for the solution of infinite-dimensional Bayesian statistical inverse problems with application to global seismic inversion

textQuantifying uncertainties in large-scale forward and inverse PDE simulations has emerged as a central challenge facing the field of computational science and engineering. The promise of modeling and simulation for prediction, design, and control cannot be fully realized unless uncertainties in models are rigorously quantified, since this uncertainty can potentially overwhelm the computed result. While statistical inverse problems can be solved today for smaller models with a handful of uncertain parameters, this task is computationally intractable using contemporary algorithms for complex systems characterized by large-scale simulations and high-dimensional parameter spaces. In this dissertation, I address issues regarding the theoretical formulation, numerical approximation, and algorithms for solution of infinite-dimensional Bayesian statistical inverse problems, and apply the entire framework to a problem in global seismic wave propagation. Classical (deterministic) approaches to solving inverse problems attempt to recover the “best-fit” parameters that match given observation data, as measured in a particular metric. In the statistical inverse problem, we go one step further to return not only a point estimate of the best medium properties, but also a complete statistical description of the uncertain parameters. The result is a posterior probability distribution that describes our state of knowledge after learning from the available data, and provides a complete description of parameter uncertainty. In this dissertation, a computational framework for such problems is described that wraps around the existing forward solvers, as long as they are appropriately equipped, for a given physical problem. Then a collection of tools, insights and numerical methods may be applied to solve the problem, and interrogate the resulting posterior distribution, which describes our final state of knowledge. We demonstrate the framework with numerical examples, including inference of a heterogeneous compressional wavespeed field for a problem in global seismic wave propagation with 10⁶ parameters.Computational Science, Engineering, and Mathematic

Scalable and Fault Tolerant Orthogonalization Based on Randomized Distributed Data Aggregation

Abstract The construction of distributed algorithms for matrix computations built on top of distributed data aggregation algorithms with randomized communication schedules is investigated. For this purpose, a new aggregation algorithm for summing or averaging distributed values, the push-flow algorithm, is developed, which achieves superior resilience properties with respect to failures compared to existing aggregation methods. It is illustrated that on a hypercube topology it asymptotically requires the same number of iterations as the optimal all-to-all reduction operation and that it scales well with the number of nodes. Orthogonalization is studied as a prototypical matrix computation task. A new fault tolerant distributed orthogonalization method rdmGS, which can produce accurate results even in the presence of node failures, is built on top of distributed data aggregation algorithms