Scalability and Performance Analysis of OpenMP Codes Using the Periscope Toolkit

In this paper, we present two new approaches while rendering necessary extensions to Periscope to perform scalability and performance analysis on OpenMP codes. Periscope is an online-based performance analysis toolkit which consists of a user defined number of analysis agents that automatically search for the performance properties while the application is running. In order to detect the scalability and performance bottlenecks of OpenMP codes using Periscope, a few newly defined performance properties and meta properties are formalized. We manifest our implementation by evaluating NAS OpenMP benchmarks. As shown in our results, our approach identifies the code regions which do not scale well and other performance problems, e.g. load imbalance in NAS parallel benchmarks

Scalable Applications on Heterogeneous System Architectures: A Systematic Performance Analysis Framework

The efficient parallel execution of scientific applications is a key challenge in high-performance computing (HPC). With growing parallelism and heterogeneity of compute resources as well as increasingly complex software, performance analysis has become an indispensable tool in the development and optimization of parallel programs. This thesis presents a framework for systematic performance analysis of scalable, heterogeneous applications. Based on event traces, it automatically detects the critical path and inefficiencies that result in waiting or idle time, e.g. due to load imbalances between parallel execution streams. As a prerequisite for the analysis of heterogeneous programs, this thesis specifies inefficiency patterns for computation offloading. Furthermore, an essential contribution was made to the development of tool interfaces for OpenACC and OpenMP, which enable a portable data acquisition and a subsequent analysis for programs with offload directives. At present, these interfaces are already part of the latest OpenACC and OpenMP API specification. The aforementioned work, existing preliminary work, and established analysis methods are combined into a generic analysis process, which can be applied across programming models. Based on the detection of wait or idle states, which can propagate over several levels of parallelism, the analysis identifies wasted computing resources and their root cause as well as the critical-path share for each program region. Thus, it determines the influence of program regions on the load balancing between execution streams and the program runtime. The analysis results include a summary of the detected inefficiency patterns and a program trace, enhanced with information about wait states, their cause, and the critical path. In addition, a ranking, based on the amount of waiting time a program region caused on the critical path, highlights program regions that are relevant for program optimization. The scalability of the proposed performance analysis and its implementation is demonstrated using High-Performance Linpack (HPL), while the analysis results are validated with synthetic programs. A scientific application that uses MPI, OpenMP, and CUDA simultaneously is investigated in order to show the applicability of the analysis

10181 Abstracts Collection -- Program Development for Extreme-Scale Computing

From May 2nd to May 7th, 2010, the Dagstuhl Seminar 10181 ``Program Development for Extreme-Scale Computing \u27\u27 was held in Schloss Dagstuhl~--~Leibniz Center for Informatics. During the seminar, several participants presented their current research, and ongoing work and open problems were discussed. Abstracts of the presentations given during the seminar as well as abstracts of seminar results and ideas are put together in this paper. Links to extended abstracts or full papers are provided, if available

Interactive Data Analysis of Multi-Run Performance Data

Multi-dimensional performance data analysis presents challenges for programmers, and users. Developers have to choose library and compiler options for each platform, analyze raw performance data, and keep up with new technologies. Users run codes on different platforms, validate results with collaborators, and analyze performance data as applications scale up. Site operators use multiple profiling tools to optimize performance, requiring the analysis of multiple sources and data types. There is currently no comprehensive tool to support the structured analysis of unstructured data, when holistic performance data analysis can offer actionable insights and improve performance. In this work, we present thicket, a tool designed based on the experiences and insights of programmers, and users to address these needs. Thicket is a Python-based data analysis toolkit that aims to make performance data exploration more accessible and user-friendly for application code developers, users, and site operators. It achieves this by providing a comprehensive interface that allows for the easy manipulation, modeling, and visualization of data collected from multiple tools and executions. The central element of Thicket is the ”thicket object,” which unifies data from multiple sources and allows for various data manipulation and modeling operations, includingfiltering, grouping, and querying, and statistical operations. Thicket also supports the useof external libraries such as scikit-learn and Extra-P for data modeling and visualization in an intuitive call tree context. Overall, Thicket aims to help users make better decisions about their application’s performance by providing actionable insights from complex and multi-dimensional performance data. Here, we present some capabilities extended by the components of thicket and important use cases that have implications beyond the data structure that provide these capabilities

TRACO: Source-to-Source Parallelizing Compiler

The paper presents a source-to-source compiler, TRACO, for automatic extraction of both coarse- and fine-grained parallelism available in C/C++ loops. Parallelization techniques implemented in TRACO are based on the transitive closure of a relation describing all the dependences in a loop. Coarse- and fine-grained parallelism is represented with synchronization-free slices (space partitions) and a legal loop statement instance schedule (time partitions), respectively. TRACO enables also applying scalar and array variable privatization as well as parallel reduction. On its output, TRACO produces compilable parallel OpenMP C/C++ and/or OpenACC C/C++ code. The effectiveness of TRACO, efficiency of parallel code produced by TRACO, and the time of parallel code production are evaluated by means of the NAS Parallel Benchmark and Polyhedral Benchmark suites. These features of TRACO are compared with closely related compilers such as ICC, Pluto, Par4All, and Cetus. Feature work is outlined

The EU Center of Excellence for Exascale in Solid Earth (ChEESE): Implementation, results, and roadmap for the second phase

publishedVersio

HPC-enabling technologies for high-fidelity combustion simulations

With the increase in computational power in the last decade and the forthcoming Exascale supercomputers, a new horizon in computational modelling and simulation is envisioned in combustion science. Considering the multiscale and multiphysics characteristics of turbulent reacting flows, combustion simulations are considered as one of the most computationally demanding applications running on cutting-edge supercomputers. Exascale computing opens new frontiers for the simulation of combustion systems as more realistic conditions can be achieved with high-fidelity methods. However, an efficient use of these computing architectures requires methodologies that can exploit all levels of parallelism. The efficient utilization of the next generation of supercomputers needs to be considered from a global perspective, that is, involving physical modelling and numerical methods with methodologies based on High-Performance Computing (HPC) and hardware architectures. This review introduces recent developments in numerical methods for large-eddy simulations (LES) and direct-numerical simulations (DNS) to simulate combustion systems, with focus on the computational performance and algorithmic capabilities. Due to the broad scope, a first section is devoted to describe the fundamentals of turbulent combustion, which is followed by a general description of state-of-the-art computational strategies for solving these problems. These applications require advanced HPC approaches to exploit modern supercomputers, which is addressed in the third section. The increasing complexity of new computing architectures, with tightly coupled CPUs and GPUs, as well as high levels of parallelism, requires new parallel models and algorithms exposing the required level of concurrency. Advances in terms of dynamic load balancing, vectorization, GPU acceleration and mesh adaptation have permitted to achieve highly-efficient combustion simulations with data-driven methods in HPC environments. Therefore, dedicated sections covering the use of high-order methods for reacting flows, integration of detailed chemistry and two-phase flows are addressed. Final remarks and directions of future work are given at the end. }The research leading to these results has received funding from the European Union’s Horizon 2020 Programme under the CoEC project, grant agreement No. 952181 and the CoE RAISE project grant agreement no. 951733.Peer ReviewedPostprint (published version

Design of robust scheduling methodologies for high performance computing

Scientific applications are often large, complex, computationally-intensive, and irregular. Loops are often an abundant source of parallelism in scientific applications. Due to the ever-increasing computational needs of scientific applications, high performance computing (HPC) systems have become larger and more complex, offering increased parallelism at multiple hardware levels. Load imbalance, caused by irregular computational load per task and unpredictable computing system characteristics (system variability), often degrades the performance of applications. Besides, perturbations, such as reduced computing power, network latency availability, or failures, can severely impact the performance of the applications. System variability and perturbations are only expected to increase in future extreme-scale computing systems. Extrapolating the current failure rate to Exascale would result in a failure every 20 minutes. Such failure rate and perturbations would render the computing systems unusable. This doctoral thesis improves the performance of computationally-intensive scientific applications on HPC systems via robust load balancing. Robust scheduling ensures and maintains improved load balanced execution under unpredictable application and system characteristics. A number of dynamic loop self-scheduling (DLS) techniques have been introduced and successfully used in scientific applications between the 1980s and 2000s. These DLS techniques are not fault-tolerant as they were originally introduced. In this thesis, we identify three major research questions to achieve robust scheduling (1) How to ensure that the DLS techniques employed in scientific applications today adhere to their original design goals and specifications? (2) How to select a DLS technique that will achieve improved performance under perturbations? (3) How to tolerate perturbations during execution and maintain a load balanced execution on HPC systems? To answer the first question, we reproduced the original experiments that introduced the DLS techniques to verify their present implementation. Simulation is used to reproduce experiments on systems from the past. Realistic simulation induces a similar analysis and conclusions to the analysis of the native results. To this end, we devised an approach for bridging the native and simulative executions of parallel applications on HPC systems. This simulation approach is used to reproduce scheduling experiments on past and present systems to verify the implementation of DLS techniques. Given the multiple levels of parallelism offered by the present HPC systems, we analyzed the load imbalance in scientific applications, from computer vision, astrophysics, and mathematical kernels, at both thread and process levels. This analysis revealed a significant interplay between thread level and process level load balancing. We found that dynamic load balancing at the thread level propagates to the process level and vice versa. However, the best application performance is only achieved by two-level dynamic load balancing. Next, we examined the performance of applications under perturbations. We found that the most robust DLS technique does not deliver the best performance under various perturbations. The most efficient DLS technique changes by changing the application, the system, or perturbations during execution. This signifies the algorithm selection problem in the DLS. We leveraged realistic simulations to address the algorithm selection problem of scheduling under perturbations via a simulation assisted approach (SimAS), which answers the second question. SimAS dynamically selects DLS techniques that improve the performance depending on the application, system, and perturbations during the execution. To answer the third question, we introduced a robust dynamic load balancing (rDLB) approach for the robust self-scheduling of scientific applications under failures (question 3). rDLB proactively reschedules already allocated tasks and requires no detection of perturbations. rDLB tolerates up to P −1 processor failures (P is the number of processors allocated to the application) and boosts the flexibility of applications against nonfatal perturbations, such as reduced availability of resources. This thesis is the first to provide insights into the interplay between thread and process level dynamic load balancing in scientific applications. Verified DLS techniques, SimAS, and rDLB are integrated into an MPI-based dynamic load balancing library (DLS4LB), which supports thirteen DLS techniques, for robust dynamic load balancing of scientific applications on HPC systems. Using the methods devised in this thesis, we improved the performance of scientific applications by up to 21% via two-level dynamic load balancing. Under perturbations, we enhanced their performance by a factor of 7 and their flexibility by a factor of 30. This thesis opens up the horizons into understanding the interplay of load balancing between various levels of software parallelism and lays the ground for robust multilevel scheduling for the upcoming Exascale HPC systems and beyond