20 research outputs found

    A Shallow U-Net Architecture for Reliably Predicting Blood Pressure (BP) from Photoplethysmogram (PPG) and Electrocardiogram (ECG) Signals

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    Cardiovascular diseases are the most common causes of death around the world. To detect and treat heart-related diseases, continuous blood pressure (BP) monitoring along with many other parameters are required. Several invasive and non-invasive methods have been developed for this purpose. Most existing methods used in hospitals for continuous monitoring of BP are invasive. On the contrary, cuff-based BP monitoring methods, which can predict systolic blood pressure (SBP) and diastolic blood pressure (DBP), cannot be used for continuous monitoring. Several studies attempted to predict BP from non-invasively collectible signals such as photoplethysmograms (PPG) and electrocardiograms (ECG), which can be used for continuous monitoring. In this study, we explored the applicability of autoencoders in predicting BP from PPG and ECG signals. The investigation was carried out on 12,000 instances of 942 patients of the MIMIC-II dataset, and it was found that a very shallow, one-dimensional autoencoder can extract the relevant features to predict the SBP and DBP with state-of-the-art performance on a very large dataset. An independent test set from a portion of the MIMIC-II dataset provided a mean absolute error (MAE) of 2.333 and 0.713 for SBP and DBP, respectively. On an external dataset of 40 subjects, the model trained on the MIMIC-II dataset provided an MAE of 2.728 and 1.166 for SBP and DBP, respectively. For both the cases, the results met British Hypertension Society (BHS) Grade A and surpassed the studies from the current literature. 2022 by the authors. Licensee MDPI, Basel, Switzerland.Funding: This work was supported in part by the Qatar National Research Fund under Grant NPRP12S-0227-190164 and in part by the International Research Collaboration Co-Fund (IRCC) through Qatar University under Grant IRCC-2021-001. The statements made herein are solely the responsibility of the authors.Scopu

    Cuffless bood pressure estimation

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    L'hypertension est une maladie qui affecte plus d'un milliard de personnes dans le monde. Il s'agit d'une des principales causes de dĂ©cĂšs; le suivi et la gestion de cette maladie sont donc cruciaux. La technologie de mesure de la pression artĂ©rielle la plus rĂ©pandue, utilisant le brassard pressurisĂ©, ne permet cependant pas un suivi en continu de la pression, ce qui limite l'Ă©tendue de son utilisation. Ces obstacles pourraient ĂȘtre surmontĂ©s par la mesure indirecte de la pression par l'entremise de l'Ă©lectrocardiographie ou de la photoplĂ©thysmographie, qui se prĂȘtent Ă  la crĂ©ation d'appareils portables, confortables et peu coĂ»teux. Ce travail de recherche, rĂ©alisĂ© en collaboration avec le dĂ©partement d'ingĂ©nierie biomĂ©dicale de l'universitĂ© de Lund, en SuĂšde, porte principalement sur la base de donnĂ©es publique Multiparameter Intelligent Monitoring in Intensive Care (MIMIC) Waveform Datasetde PhysioNet, largement utilisĂ©e dans la littĂ©rature portant sur le dĂ©veloppement et la validation d'algorithmes d'estimation de la pression artĂ©rielle sans brassard pressurisĂ©. Puisque ces donnĂ©es proviennent d'unitĂ©s de soins intensifs et ont Ă©tĂ© recueillies dans des conditions non contrĂŽlĂ©es, plusieurs chercheurs ont avancĂ© que les modĂšles d'estimation de la pression artĂ©rielle se basant sur ces donnĂ©es ne sont pas valides pour la population gĂ©nĂ©rale. Pour la premiĂšre fois dans la littĂ©rature, cette hypothĂšse est ici mise Ă  l'Ă©preuve en comparant les donnĂ©es de MIMIC Ă  un ensemble de donnĂ©es de rĂ©fĂ©rence plus reprĂ©sentatif de la population gĂ©nĂ©rale et recueilli selon une procĂ©dure expĂ©rimentale bien dĂ©finie. Des tests statistiques rĂ©vĂšlent une diffĂ©rence significative entre les ensembles de donnĂ©es, ainsi qu'une rĂ©ponse diffĂ©rente aux changements de pression artĂ©rielle, et ce, pour la majoritĂ© des caractĂ©ristiques extraites du photoplĂ©thysmogramme. De plus, les rĂ©percussions de ces diffĂ©rences sont dĂ©montrĂ©es Ă  l'aide d'un test pratique d'estimation de la pression artĂ©rielle par apprentissage machine. En effet, un modĂšle entraĂźnĂ© sur l'un des ensembles de donnĂ©es perd en grande partie sa capacitĂ© prĂ©dictive lorsque validĂ© sur l'autre ensemble, par rapport Ă  sa performance en validation croisĂ©e sur l'ensemble d'entraĂźnement. Ces rĂ©sultats constituent les contributions principales de ce travail et ont Ă©tĂ© soumis sous forme d'article Ă  la revue Physiological Measurement. Un volet additionnel de la recherche portant sur l'analyse du pouls par dĂ©composition (pulse de composition analysis ou PDA) est prĂ©sentĂ© dans un deuxiĂšme temps. La PDA est une technique permettant de sĂ©parer l'onde du pouls en une composante excitative et ses rĂ©flexions, utilisĂ©e pour extraire des caractĂ©ristiques du signal dans le contexte de l'estimation de la pression artĂ©rielle. Les rĂ©sultats obtenus dĂ©montrent que l'estimation de la position temporelle des rĂ©flexions Ă  partir de points de rĂ©fĂ©rence de la dĂ©rivĂ©e seconde du signal donne d'aussi bons rĂ©sultats que leur dĂ©termination par la mĂ©thode traditionnelle d'approximation successive, tout en Ă©tant beaucoup plus rapide. Une mĂ©thode rĂ©cursive rapide de PDA est Ă©galement Ă©tudiĂ©e, mais dĂ©montrĂ©e comme inadĂ©quate dans un contexte de comparaison intersujet.Hypertension affects more than one billion people worldwide. As one of the leading causes of death, tracking and management of the condition is critical, but is impeded by the current cuff-based blood pressure monitoring technology. Continuous and more ubiquitous blood pressure monitoring may be achieved through simpler, cheaper and less invasive cuff-less devices, performing an indirect measure through electrocardiography or photoplethysmography. Produced in collaboration with the department of biomedical engineering of Lund Universityin Sweden, this work focuses on public data that has been widely used in the literature to develop and validate cuffless blood pressure estimation algorithms: The Multiparameter Intelligent Monitoring in Intensive Care (MIMIC) Waveform Dataset from PhysioNet. Because it is sourced from intensive care units and collected in absence of controlled conditions, it has many times been hypothesized that blood pressure estimation models based on its data may not generalize to the normal population. This work tests that hypothesis for the first time by comparing the MIMIC dataset to another reference dataset more representative of the general population and obtained under controlled experimental conditions. Through statistical testing, a majority of photoplethysmogram based features extracted from MIMIC are shown to differ significantly from the reference dataset and to respond differently to blood pressure changes. In addition, the practical impact of those differences is tested through the training and cross validating of machine learning models on both datasets, demonstrating an acute loss of predictive powers of models facing data from outside the dataset used in the training phase. As the main contribution of this work, these findings have been submitted as a journal paper to Physiological Measurement. Additional original research is also presented in relation to pulse decomposition analysis (PDA), a technique used to separate the pulse wave from its reflections, in the context of blood pressure estimation. The results obtained through this work show that when using the timing of reflections as part of blood pressure predictors, estimating those timings from fiducial points in the second derivative works as well as using the traditional and computationally costly successive approximation PDA method, while being many times faster. An alternative fast recursive PDA algorithm is also presented and shown to perform inadequately in an inter-subject comparison context

    Photoplethysmography upon cold stress — impact of measurement site and acquisition mode

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    Photoplethysmography (PPG) allows various statements about the physiological state. It supports multiple recording setups, i.e., application to various body sites and different acquisition modes, rendering the technique a versatile tool for various situations. Owing to anatomical, physiological and metrological factors, PPG signals differ with the actual setup. Research on such differences can deepen the understanding of prevailing physiological mechanisms and path the way towards improved or novel methods for PPG analysis. The presented work systematically investigates the impact of the cold pressor test (CPT), i.e., a painful stimulus, on the morphology of PPG signals considering different recording setups. Our investigation compares contact PPG recorded at the finger, contact PPG recorded at the earlobe and imaging PPG (iPPG), i.e., non-contact PPG, recorded at the face. The study bases on own experimental data from 39 healthy volunteers. We derived for each recording setup four common morphological PPG features from three intervals around CPT. For the same intervals, we derived blood pressure and heart rate as reference. To assess differences between the intervals, we used repeated measures ANOVA together with paired t-tests for each feature and we calculated Hedges’ g to quantify effect sizes. Our analyses show a distinct impact of CPT. As expected, blood pressure shows a highly significant and persistent increase. Independently of the recording setup, all PPG features show significant changes upon CPT as well. However, there are marked differences between recording setups. Effect sizes generally differ with the finger PPG showing the strongest response. Moreover, one feature (pulse width at half amplitude) shows an inverse behavior in finger PPG and head PPG (earlobe PPG and iPPG). In addition, iPPG features behave partially different from contact PPG features as they tend to return to baseline values while contact PPG features remain altered. Our findings underline the importance of recording setup and physiological as well as metrological differences that relate to the setups. The actual setup must be considered in order to properly interpret features and use PPG. The existence of differences between recording setups and a deepened knowledge on such differences might open up novel diagnostic methods in the future

    Photoplethysmography-Based Biomedical Signal Processing

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    In this dissertation, photoplethysmography-based biomedical signal processing methods are developed and analyzed. The developed methods solve problems concerning the estimation of the heart rate during physical activity and the monitoring of cardiovascular health. For the estimation of heart rate during physical activity, two methods are presented that are very accurate in estimating the instantaneous heart rate at the wrist and, at the same time, are computationally efficient so that they can easily be integrated into wearables. In the context of cardiovascular health monitoring, a method for the detection of atrial fibrillation using the video camera of a smartphone is proposed that achieves a high detection rate of atrial fibrillation (AF) on a clinical pre-study data set. Further monitoring of cardiovascular parameters includes the estimation of blood pressure (BP), pulse wave velocity (PWV), and vascular age index (VAI), for which an approach is presented that requires only a single photoplethysmographic (PPG) signal. Heart rate estimation during physical activity using PPG signals constitutes an important research focus of this thesis. In this work, two computationally efficient algorithms are presented that estimate the heart rate from two PPG signals using a three axis accelerometer. In the first approach, adaptive filters are applied to estimate motion artifacts that severely deteriorate the signal quality. The non-stationary relationship between the measured acceleration signals and the artifacts is modeled as a linear system. The outputs of the adaptive filters are combined to further enhance the signal quality and a constrained heart rate tracker follows the most probable high energy continuous line in the spectral domain. The second approach is modest in computational complexity and very fast in execution compared to existing approaches. It combines correlation-based fundamental frequency indicating functions and spectral combination to enhance the correlated useful signal and suppress uncorrelated noise. Additional harmonic noise damping further reduces the impact of strong motion artifacts and a spectral tracking procedure uses a linear least squares prediction. Both approaches are modest in computational complexity and especially the second approach is very fast in execution, as it is shown on a widely used benchmark data set and compared to state-of-the-art methods. The second research focus and a further major contribution of this thesis lies in the monitoring of the cardiovascular health with a single PPG signal. Two methods are presented, one for detection of AF and one for the estimation of BP, PWV, and VAI. The first method is able to detect AF based on a smartphone filming the finger placed on the video camera. The algorithm transforms the video into a PPG signal and extracts features which are then used to discriminate between AF and normal sinus rhythm (NSR). Perfect detection of AF is already achieved on a data set of 326 measurements (including 20 with AF) that were taken at a clinical pre-study using an appropriate pair of features whereby a decision is formed through a simple linear decision equation. The second method aims at estimating cardiovascular parameters from a single PPG signal without the conventional use of an additional electrocardiogram (ECG). The proposed method extracts a large number of features from the PPG signal and its first and second order difference series, and reconstructs missing features by the use of matrix completion. The estimation of cardiovascular parameters is based on a nonlinear support vector regression (SVR) estimator and compared to single channel PPG based estimators using a linear regression model and a pulse arrival time (PAT) based method. If the training data set contains the person for whom the cardiovascular parameters are to be determined, the proposed method can provide an accurate estimate without further calibration. All proposed algorithms are applied to real data that we have either recorded ourselves in our biomedical laboratory, that have been recorded by a clinical research partner, or that are freely available as benchmark data sets

    Continuous Cardiorespiratory Monitoring Using Ballistocardiography From Load Cells Embedded in a Hospital Bed

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    The objective of this research is to explore signal processing and machine learning techniques to allow continuous monitoring of cardiorespiratory parameters using the ballistocardiogram (BCG) signals recorded with sensors embedded in a hospital bed. First, the heart rate (HR) estimation algorithms were presented. The first is signal processing-based HR estimation with array processing for multi-channel combination. The second uses a deep learning (DL) model that transforms BCG signals into an interpretable triangular waveform, from which heartbeat locations can be estimated. Second part of the work focuses on estimating respiratory rate (RR) and respiratory volume (RV) using the respiration waveforms derived from the low-frequency components of the load cell signals. Lastly, this work presents two models for blood pressure (BP) estimation -- 1) Conventional pulse transit time (PTT)-based model and 2) DL-based model, both using multi-channel BCG and the photoplethysmogram (PPG) signals to extract features. Overall, this work established methods to enable non-invasive and continuous monitoring of standard vital signs utilizing the sensors already embedded in commonly-deployed commercially available hospital beds. Such technologies could potentially improve the continuous assessment of the patients' physiologic state without adding an extra burden on the caregivers.Ph.D

    Biosignal-Based Digital Biomarkers for Prediction of Ventilator Weaning Success

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    We evaluated new features from biosignals comprising diverse physiological response information to predict the outcome of weaning from mechanical ventilation (MV). We enrolled 89 patients who were candidates for weaning from MV in the intensive care unit and collected continuous biosignal data: electrocardiogram (ECG), respiratory impedance, photoplethysmogram (PPG), arterial blood pressure, and ventilator parameters during a spontaneous breathing trial (SBT). We compared the collected biosignal data's variability between patients who successfully discontinued MV (n = 67) and patients who did not (n = 22). To evaluate the usefulness of the identified factors for predicting weaning success, we developed a machine learning model and evaluated its performance by bootstrapping. The following markers were different between the weaning success and failure groups: the ratio of standard deviations between the short-term and long-term heart rate variability in a Poincaré plot, sample entropy of ECG and PPG, α values of ECG, and respiratory impedance in the detrended fluctuation analysis. The area under the receiver operating characteristic curve of the model was 0.81 (95% confidence interval: 0.70-0.92). This combination of the biosignal data-based markers obtained during SBTs provides a promising tool to assist clinicians in determining the optimal extubation time.ope

    Recent development of respiratory rate measurement technologies

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    Respiratory rate (RR) is an important physiological parameter whose abnormity has been regarded as an important indicator of serious illness. In order to make RR monitoring simple to do, reliable and accurate, many different methods have been proposed for such automatic monitoring. According to the theory of respiratory rate extraction, methods are categorized into three modalities: extracting RR from other physiological signals, RR measurement based on respiratory movements, and RR measurement based on airflow. The merits and limitations of each method are highlighted and discussed. In addition, current works are summarized to suggest key directions for the development of future RR monitoring methodologies
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