Routing of embryonic arrays using genetic algorithms

This paper presents a genetic algorithm (GA) that solves the problem of routing a multiplexer network into a MUXTREE embryonic array. The procedure to translate the multiplexer network into a form suitable for the GAbased router is explained. The genetic algorithm works on a population of configuration registers (genome) that define the functionality and connectivity of the array. Fitness of each individual is evaluated and those closer to solving the required routing are selected for the next generation. A matrix-based method to evaluate the routing defined by each individual is also explained. The output of the genetic router is a VHDL program describing a look-up table that receives the cell co-ordinates as inputs and returns the value of the corresponding configuration register. The routing of a module-10 counter is presented as an example of the capabilities of the genetic router. The genetic algorithm approach provides not one, but multiple solutions to the routing problem, opening the road to a new level of redundancy where a new "genome" can be downloaded to the array when the conventional reconfiguration strategy runs out of spare cells

Embryonics: A path to artificial life?

Electronic systems, no matter how clever and intelligent they are, cannot yet demonstrate the reliability that biological systems can. Perhaps we can learn from these processes, which have developed through millions of years of evolution, in our pursuit of highly reliable systems. This article discusses how such systems, inspired by biological principles, might be built using simple embryonic cells. We illustrate how they can monitor their own functional integrity in order to protect themselves from internal failure or from hostile environmental effects and how faults caused by DNA mutation or cell death can be repaired and thus full system functionality restored. ©2006 Massachusetts Institute of Technology

Toward Biologically-Inspired Self-Healing, Resilient Architectures for Digital Instrumentation and Control Systems and Embedded Devices

Digital Instrumentation and Control (I&C) systems in safety-related applications of next generation industrial automation systems require high levels of resilience against different fault classes. One of the more essential concepts for achieving this goal is the notion of resilient and survivable digital I&C systems. In recent years, self-healing concepts based on biological physiology have received attention for the design of robust digital systems. However, many of these approaches have not been architected from the outset with safety in mind, nor have they been targeted for the automation community where a significant need exists. This dissertation presents a new self-healing digital I&C architecture called BioSymPLe, inspired from the way nature responds, defends and heals: the stem cells in the immune system of living organisms, the life cycle of the living cell, and the pathway from Deoxyribonucleic acid (DNA) to protein. The BioSymPLe architecture is integrating biological concepts, fault tolerance techniques, and operational schematics for the international standard IEC 61131-3 to facilitate adoption in the automation industry. BioSymPLe is organized into three hierarchical levels: the local function migration layer from the top side, the critical service layer in the middle, and the global function migration layer from the bottom side. The local layer is used to monitor the correct execution of functions at the cellular level and to activate healing mechanisms at the critical service level. The critical layer is allocating a group of functional B cells which represent the building block that executes the intended functionality of critical application based on the expression for DNA genetic codes stored inside each cell. The global layer uses a concept of embryonic stem cells by differentiating these type of cells to repair the faulty T cells and supervising all repair mechanisms. Finally, two industrial applications have been mapped on the proposed architecture, which are capable of tolerating a significant number of faults (transient, permanent, and hardware common cause failures CCFs) that can stem from environmental disturbances and we believe the nexus of its concepts can positively impact the next generation of critical systems in the automation industry

Hexarray: A Novel Self-Reconfigurable Hardware System

Evolvable hardware (EHW) is a powerful autonomous system for adapting and finding solutions within a changing environment. EHW consists of two main components: a reconfigurable hardware core and an evolutionary algorithm. The majority of prior research focuses on improving either the reconfigurable hardware or the evolutionary algorithm in place, but not both. Thus, current implementations suffer from being application oriented and having slow reconfiguration times, low efficiencies, and less routing flexibility. In this work, a novel evolvable hardware platform is proposed that combines a novel reconfigurable hardware core and a novel evolutionary algorithm. The proposed reconfigurable hardware core is a systolic array, which is called HexArray. HexArray was constructed using processing elements with a redesigned architecture, called HexCells, which provide routing flexibility and support for hybrid reconfiguration schemes. The improved evolutionary algorithm is a genome-aware genetic algorithm (GAGA) that accelerates evolution. Guided by a fitness function the GAGA utilizes context-aware genetic operators to evolve solutions. The operators are genome-aware constrained (GAC) selection, genome-aware mutation (GAM), and genome-aware crossover (GAX). The GAC selection operator improves parallelism and reduces the redundant evaluations. The GAM operator restricts the mutation to the part of the genome that affects the selected output. The GAX operator cascades, interleaves, or parallel-recombines genomes at the cell level to generate better genomes. These operators improve evolution while not limiting the algorithm from exploring all areas of a solution space. The system was implemented on a SoC that includes a programmable logic (i.e., field-programmable gate array) to realize the HexArray and a processing system to execute the GAGA. A computationally intensive application that evolves adaptive filters for image processing was chosen as a case study and used to conduct a set of experiments to prove the developed system robustness. Through an iterative process using the genetic operators and a fitness function, the EHW system configures and adapts itself to evolve fitter solutions. In a relatively short time (e.g., seconds), HexArray is able to evolve autonomously to the desired filter. By exploiting the routing flexibility in the HexArray architecture, the EHW has a simple yet effective mechanism to detect and tolerate faulty cells, which improves system reliability. Finally, a mechanism that accelerates the evolution process by hiding the reconfiguration time in an “evolve-while-reconfigure” process is presented. In this process, the GAGA utilizes the array routing flexibility to bypass cells that are being configured and evaluates several genomes in parallel

Exploiting development to enhance the scalability of hardware evolution.

Evolutionary algorithms do not scale well to the large, complex circuit design problems typical of the real world. Although techniques based on traditional design decomposition have been proposed to enhance hardware evolution's scalability, they often rely on traditional domain knowledge that may not be appropriate for evolutionary search and might limit evolution's opportunity to innovate. It has been proposed that reliance on such knowledge can be avoided by introducing a model of biological development to the evolutionary algorithm, but this approach has not yet achieved its potential. Prior demonstrations of how development can enhance scalability used toy problems that are not indicative of evolving hardware. Prior attempts to apply development to hardware evolution have rarely been successful and have never explored its effect on scalability in detail. This thesis demonstrates that development can enhance scalability in hardware evolution, primarily through a statistical comparison of hardware evolution's performance with and without development using circuit design problems of various sizes. This is reinforced by proposing and demonstrating three key mechanisms that development uses to enhance scalability: the creation of modules, the reuse of modules, and the discovery of design abstractions. The thesis includes several minor contributions: hardware is evolved using a common reconfigurable architecture at a lower level of abstraction than reported elsewhere. It is shown that this can allow evolution to exploit the architecture more efficiently and perhaps search more effectively. Also the benefits of several features of developmental models are explored through the biases they impose on the evolutionary search. Features that are explored include the type of environmental context development uses and the constraints on symmetry and information transmission they impose, genetic operators that may improve the robustness of gene networks, and how development is mapped to hardware. Also performance is compared against contemporary developmental models

SABRE: A bio-inspired fault-tolerant electronic architecture

As electronic devices become increasingly complex, ensuring their reliable, fault-free operation is becoming correspondingly more challenging. It can be observed that, in spite of their complexity, biological systems are highly reliable and fault tolerant. Hence, we are motivated to take inspiration for biological systems in the design of electronic ones. In SABRE (self-healing cellular architectures for biologically inspired highly reliable electronic systems), we have designed a bio-inspired fault-tolerant hierarchical architecture for this purpose. As in biology, the foundation for the whole system is cellular in nature, with each cell able to detect faults in its operation and trigger intra-cellular or extra-cellular repair as required. At the next level in the hierarchy, arrays of cells are configured and controlled as function units in a transport triggered architecture (TTA), which is able to perform partial-dynamic reconfiguration to rectify problems that cannot be solved at the cellular level. Each TTA is, in turn, part of a larger multi-processor system which employs coarser grain reconfiguration to tolerate faults that cause a processor to fail. In this paper, we describe the details of operation of each layer of the SABRE hierarchy, and how these layers interact to provide a high systemic level of fault tolerance. © 2013 IOP Publishing Ltd

An Evolving and Developing Cellular Electronic Circuit

A novel multi-cellular electronic circuit capable of evolution and development is described here. The circuit is composed of identical cells whose shape and location in the system is arbitrary. Cells all contain the complete genetic description of the final system, as in living organisms. Through a mechanism of development, cells connect to each other using a fully distributed hardware routing mechanism and differentiate by expressing a corresponding part of the genetic code thereby taking a specific functionality and connectivity in the system. The configuration of the system is found by using artificial evolution and intrinsic evolution at the schematic level is possible. Applications include the approximation of boolean functions and the evolution of a controller capable of navigating a Khepera robot while avoiding obstacles. The circuit is suited for a custom chip called POEtic, which is a generic platform to implement bio-inspired applications