On the effects of firing memory in the dynamics of conjunctive networks

Boolean networks are one of the most studied discrete models in the context of the study of gene expression. In order to define the dynamics associated to a Boolean network, there are several \emph{update schemes} that range from parallel or \emph{synchronous} to \emph{asynchronous.} However, studying each possible dynamics defined by different update schemes might not be efficient. In this context, considering some type of temporal delay in the dynamics of Boolean networks emerges as an alternative approach. In this paper, we focus in studying the effect of a particular type of delay called \emph{firing memory} in the dynamics of Boolean networks. Particularly, we focus in symmetric (non-directed) conjunctive networks and we show that there exist examples that exhibit attractors of non-polynomial period. In addition, we study the prediction problem consisting in determinate if some vertex will eventually change its state, given an initial condition. We prove that this problem is {\bf PSPACE}-complete

A Theory of Partitioned Global Address Spaces

Partitioned global address space (PGAS) is a parallel programming model for the development of applications on clusters. It provides a global address space partitioned among the cluster nodes, and is supported in programming languages like C, C++, and Fortran by means of APIs. In this paper we provide a formal model for the semantics of single instruction, multiple data programs using PGAS APIs. Our model reflects the main features of popular real-world APIs such as SHMEM, ARMCI, GASNet, GPI, and GASPI. A key feature of PGAS is the support for one-sided communication: a node may directly read and write the memory located at a remote node, without explicit synchronization with the processes running on the remote side. One-sided communication increases performance by decoupling process synchronization from data transfer, but requires the programmer to reason about appropriate synchronizations between reads and writes. As a second contribution, we propose and investigate robustness, a criterion for correct synchronization of PGAS programs. Robustness corresponds to acyclicity of a suitable happens-before relation defined on PGAS computations. The requirement is finer than the classical data race freedom and rules out most false error reports. Our main result is an algorithm for checking robustness of PGAS programs. The algorithm makes use of two insights. Using combinatorial arguments we first show that, if a PGAS program is not robust, then there are computations in a certain normal form that violate happens-before acyclicity. Intuitively, normal-form computations delay remote accesses in an ordered way. We then devise an algorithm that checks for cyclic normal-form computations. Essentially, the algorithm is an emptiness check for a novel automaton model that accepts normal-form computations in streaming fashion. Altogether, we prove the robustness problem is PSpace-complete

Finitary languages

The class of omega-regular languages provides a robust specification language in verification. Every omega-regular condition can be decomposed into a safety part and a liveness part. The liveness part ensures that something good happens "eventually". Finitary liveness was proposed by Alur and Henzinger as a stronger formulation of liveness. It requires that there exists an unknown, fixed bound b such that something good happens within b transitions. In this work we consider automata with finitary acceptance conditions defined by finitary Buchi, parity and Streett languages. We study languages expressible by such automata: we give their topological complexity and present a regular-expression characterization. We compare the expressive power of finitary automata and give optimal algorithms for classical decisions questions. We show that the finitary languages are Sigma 2-complete; we present a complete picture of the expressive power of various classes of automata with finitary and infinitary acceptance conditions; we show that the languages defined by finitary parity automata exactly characterize the star-free fragment of omega B-regular languages; and we show that emptiness is NLOGSPACE-complete and universality as well as language inclusion are PSPACE-complete for finitary parity and Streett automata

Robustness against Power is PSPACE-complete

Power is a RISC architecture developed by IBM, Freescale, and several other companies and implemented in a series of POWER processors. The architecture features a relaxed memory model providing very weak guarantees with respect to the ordering and atomicity of memory accesses. Due to these weaknesses, some programs that are correct under sequential consistency (SC) show undesirable effects when run under Power. We call these programs not robust against the Power memory model. Formally, a program is robust if every computation under Power has the same data and control dependencies as some SC computation. Our contribution is a decision procedure for robustness of concurrent programs against the Power memory model. It is based on three ideas. First, we reformulate robustness in terms of the acyclicity of a happens-before relation. Second, we prove that among the computations with cyclic happens-before relation there is one in a certain normal form. Finally, we reduce the existence of such a normal-form computation to a language emptiness problem. Altogether, this yields a PSPACE algorithm for checking robustness against Power. We complement it by a matching lower bound to show PSPACE-completeness

Delta-Complete Decision Procedures for Satisfiability over the Reals

We introduce the notion of "\delta-complete decision procedures" for solving SMT problems over the real numbers, with the aim of handling a wide range of nonlinear functions including transcendental functions and solutions of Lipschitz-continuous ODEs. Given an SMT problem \varphi and a positive rational number \delta, a \delta-complete decision procedure determines either that \varphi is unsatisfiable, or that the "\delta-weakening" of \varphi is satisfiable. Here, the \delta-weakening of \varphi is a variant of \varphi that allows \delta-bounded numerical perturbations on \varphi. We prove the existence of \delta-complete decision procedures for bounded SMT over reals with functions mentioned above. For functions in Type 2 complexity class C, under mild assumptions, the bounded \delta-SMT problem is in NP^C. \delta-Complete decision procedures can exploit scalable numerical methods for handling nonlinearity, and we propose to use this notion as an ideal requirement for numerically-driven decision procedures. As a concrete example, we formally analyze the DPLL framework, which integrates Interval Constraint Propagation (ICP) in DPLL(T), and establish necessary and sufficient conditions for its \delta-completeness. We discuss practical applications of \delta-complete decision procedures for correctness-critical applications including formal verification and theorem proving.Comment: A shorter version appears in IJCAR 201

The Complexity of Online Manipulation of Sequential Elections

Most work on manipulation assumes that all preferences are known to the manipulators. However, in many settings elections are open and sequential, and manipulators may know the already cast votes but may not know the future votes. We introduce a framework, in which manipulators can see the past votes but not the future ones, to model online coalitional manipulation of sequential elections, and we show that in this setting manipulation can be extremely complex even for election systems with simple winner problems. Yet we also show that for some of the most important election systems such manipulation is simple in certain settings. This suggests that when using sequential voting, one should pay great attention to the details of the setting in choosing one's voting rule. Among the highlights of our classifications are: We show that, depending on the size of the manipulative coalition, the online manipulation problem can be complete for each level of the polynomial hierarchy or even for PSPACE. We obtain the most dramatic contrast to date between the nonunique-winner and unique-winner models: Online weighted manipulation for plurality is in P in the nonunique-winner model, yet is coNP-hard (constructive case) and NP-hard (destructive case) in the unique-winner model. And we obtain what to the best of our knowledge are the first P^NP[1]-completeness and P^NP-completeness results in the field of computational social choice, in particular proving such completeness for, respectively, the complexity of 3-candidate and 4-candidate (and unlimited-candidate) online weighted coalition manipulation of veto elections.Comment: 24 page