Mapping the distribution of invasive tree species using deep one-class classification in the tropical montane landscape of Kenya

Some invasive tree species threaten biodiversity and cause irreversible damage to global ecosystems. The key to controlling and monitoring the propagation of invasive tree species is to detect their occurrence as early as possible. In this regard, one-class classification (OCC) shows potential in forest areas with abundant species richness since it only requires a few positive samples of the invasive tree species to be mapped, instead of all the species. However, the classical OCC method in remote sensing is heavily dependent on manually designed features, which have a limited ability in areas with complex species distributions. Deep learning based tree species classification methods mostly focus on multi-class classification, and there have been few studies of the deep OCC of tree species. In this paper, a deep positive and unlabeled learning based OCC framework—ITreeDet—is proposed for identifying the invasive tree species of Eucalyptus spp. (eucalyptus) and Acacia mearnsii (black wattle) in the Taita Hills of southern Kenya. In the ITreeDet framework, an absNegative risk estimator is designed to train a robust deep OCC model by fully using the massive unlabeled data. Compared with the state-of-the-art OCC methods, ITreeDet represents a great improvement in detection accuracy, and the F1-score was 0.86 and 0.70 for eucalyptus and black wattle, respectively. The study area covers 100 km2 of the Taita Hills, where, according to our findings, the total area of eucalyptus and black wattle is 1.61 km2 and 3.24 km2, respectively, which represent 6.78% and 13.65% of the area covered by trees and forest. In addition, both invasive tree species are located in the higher elevations, and the extensive spread of black wattle around the study area confirms its invasive tendency. The maps generated by the use of the proposed algorithm will help local government to develop management strategies for these two invasive species.Peer reviewe

Image-based Semantic Segmentation of Large-scale Terrestrial Laser Scanning Point Clouds

Large-scale point cloud data acquired using terrestrial laser scanning (TLS) often need to be semantically segmented to support many applications. To this end, various three-dimensional (3D) methods and two-dimensional (i.e., image-based) methods have been developed. For large-scale point cloud data, 3D methods often require extensive computational effort. In contrast, image-based methods are favourable from the perspective of computational efficiency. However, the semantic segmentation accuracy achieved by existing image-based methods is significantly lower than that achieved by 3D methods. On this basis, the aim of this PhD thesis is to improve the accuracy of image-based semantic segmentation methods for TLS point cloud data while maintaining its relatively high efficiency. In this thesis, the optimal combination of commonly used features was first found, and an efficient manual feature selection method was proposed. It was found that existing image-based methods are highly dependent on colour information and do not provide an effective means of representing and utilising geometric features of scenes in images. To address this problem, an image enhancement method was developed to reveal the local geometric features in images derived by the projection of point cloud coordinates. Subsequently, to better utilise neural network models that are pre-trained on three-channel (i.e., RGB) image datasets, a feature extraction method (LC-Net) and a feature selection method (OSTA) were developed to reduce the higher dimension of image-based features to three. Finally, a stacking-based semantic segmentation (SBSS) framework was developed to further improve segmentation accuracy. By integrating SBSS, the dimension-reduction method (i.e. OSTA) and locally enhanced geometric features, a mean Intersection over Union (mIoU) of 76.6% and an Overall Accuracy (OA) of 93.8% were achieved on the Semantic3D (Reduced-8) benchmark. This set the state-of-the-art (SOTA) for the semantic segmentation accuracy of image-based methods and is very close to the SOTA accuracy of 3D method (i.e., 77.8% mIoU and 94.3% OA). Meanwhile, the integrated method took less than 10% of the processing time (52.64s versus 563.6s) of the fastest SOTA 3D method

Recent Developments in Smart Healthcare

Medicine is undergoing a sector-wide transformation thanks to the advances in computing and networking technologies. Healthcare is changing from reactive and hospital-centered to preventive and personalized, from disease focused to well-being centered. In essence, the healthcare systems, as well as fundamental medicine research, are becoming smarter. We anticipate significant improvements in areas ranging from molecular genomics and proteomics to decision support for healthcare professionals through big data analytics, to support behavior changes through technology-enabled self-management, and social and motivational support. Furthermore, with smart technologies, healthcare delivery could also be made more efficient, higher quality, and lower cost. In this special issue, we received a total 45 submissions and accepted 19 outstanding papers that roughly span across several interesting topics on smart healthcare, including public health, health information technology (Health IT), and smart medicine

Representative-based Big Data Processing in Communications and Machine Learning

The present doctoral dissertation focuses on representative-based processing proper for a big set of high-dimensional data. Compression and subset selection are considered as two main effective methods for representing a big set of data by a much smaller set of variables. Compressive sensing, matrix singular value decomposition, and tensor decomposition are employed as powerful mathematical tools to analyze the original data in terms of their representatives. Spectrum sensing is an important application of the developed theoretical analysis. In a cognitive radio network (CRN), primary users (PUs) coexist with secondary users (SUs). However, the secondary network aims to characterize PUs in order to establish a communication link without any interference with the primary network. A dynamic and efficient spectrum sensing framework is studied based on advanced algebraic tools. In a CRN, collecting information from all SUs is energy inefficient and computationally complex. A novel sensor selection algorithm based on the compressed sensing theory is devised which is compatible with the algebraic nature of the spectrum sensing problem. Moreover, some state-of-the-art applications in machine learning are investigated. One of the main contributions of the present dissertation is the introduction a versatile data selection algorithm which is referred as spectrum pursuit (SP). The goal of SP is to reduce a big set of data to a small-size subset such that the linear span of the selected data is as close as possible to all data. SP enjoys a low-complexity procedure which enables SP to be extended to more complex selection models. The kernel spectrum pursuit (KSP) facilitates selection from a union of non-linear manifolds. This dissertation investigates a number of important applications in machine learning including fast training of generative adversarial networks (GANs), graph-based label propagation, few shot classification, and fast subspace clustering

Políticas de Copyright de Publicações Científicas em Repositórios Institucionais: O Caso do INESC TEC

A progressiva transformação das práticas científicas, impulsionada pelo desenvolvimento das novas Tecnologias de Informação e Comunicação (TIC), têm possibilitado aumentar o acesso à informação, caminhando gradualmente para uma abertura do ciclo de pesquisa. Isto permitirá resolver a longo prazo uma adversidade que se tem colocado aos investigadores, que passa pela existência de barreiras que limitam as condições de acesso, sejam estas geográficas ou financeiras. Apesar da produção científica ser dominada, maioritariamente, por grandes editoras comerciais, estando sujeita às regras por estas impostas, o Movimento do Acesso Aberto cuja primeira declaração pública, a Declaração de Budapeste (BOAI), é de 2002, vem propor alterações significativas que beneficiam os autores e os leitores. Este Movimento vem a ganhar importância em Portugal desde 2003, com a constituição do primeiro repositório institucional a nível nacional. Os repositórios institucionais surgiram como uma ferramenta de divulgação da produção científica de uma instituição, com o intuito de permitir abrir aos resultados da investigação, quer antes da publicação e do próprio processo de arbitragem (preprint), quer depois (postprint), e, consequentemente, aumentar a visibilidade do trabalho desenvolvido por um investigador e a respetiva instituição. O estudo apresentado, que passou por uma análise das políticas de copyright das publicações científicas mais relevantes do INESC TEC, permitiu não só perceber que as editoras adotam cada vez mais políticas que possibilitam o auto-arquivo das publicações em repositórios institucionais, como também que existe todo um trabalho de sensibilização a percorrer, não só para os investigadores, como para a instituição e toda a sociedade. A produção de um conjunto de recomendações, que passam pela implementação de uma política institucional que incentive o auto-arquivo das publicações desenvolvidas no âmbito institucional no repositório, serve como mote para uma maior valorização da produção científica do INESC TEC.The progressive transformation of scientific practices, driven by the development of new Information and Communication Technologies (ICT), which made it possible to increase access to information, gradually moving towards an opening of the research cycle. This opening makes it possible to resolve, in the long term, the adversity that has been placed on researchers, which involves the existence of barriers that limit access conditions, whether geographical or financial. Although large commercial publishers predominantly dominate scientific production and subject it to the rules imposed by them, the Open Access movement whose first public declaration, the Budapest Declaration (BOAI), was in 2002, proposes significant changes that benefit the authors and the readers. This Movement has gained importance in Portugal since 2003, with the constitution of the first institutional repository at the national level. Institutional repositories have emerged as a tool for disseminating the scientific production of an institution to open the results of the research, both before publication and the preprint process and postprint, increase the visibility of work done by an investigator and his or her institution. The present study, which underwent an analysis of the copyright policies of INESC TEC most relevant scientific publications, allowed not only to realize that publishers are increasingly adopting policies that make it possible to self-archive publications in institutional repositories, all the work of raising awareness, not only for researchers but also for the institution and the whole society. The production of a set of recommendations, which go through the implementation of an institutional policy that encourages the self-archiving of the publications developed in the institutional scope in the repository, serves as a motto for a greater appreciation of the scientific production of INESC TEC