7 research outputs found

    Analysis of Different Filters for Image Despeckling : A Review

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    Digital image acquisition and processing in clinical diagnosis plays a significant part. Medical images at the time of acquisition can be corrupted via noise. Removal of this noise from images is a challenging problem. The presence of signal dependent noise is referred as speckle which degrades the actual quality of an image. Considering, several techniques have been developed focused on speckle noise reduction. The primary purpose of these techniques was to improve visualization of an image followed by preprocessing step for segmentation, feature extraction and registration. The scope of this paper is to provide an overview of despeckling techniques

    Analysis and Synthesis Prior Greedy Algorithms for Non-linear Sparse Recovery

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    In this work we address the problem of recovering sparse solutions to non linear inverse problems. We look at two variants of the basic problem, the synthesis prior problem when the solution is sparse and the analysis prior problem where the solution is cosparse in some linear basis. For the first problem, we propose non linear variants of the Orthogonal Matching Pursuit (OMP) and CoSamp algorithms; for the second problem we propose a non linear variant of the Greedy Analysis Pursuit (GAP) algorithm. We empirically test the success rates of our algorithms on exponential and logarithmic functions. We model speckle denoising as a non linear sparse recovery problem and apply our technique to solve it. Results show that our method outperforms state of the art methods in ultrasound speckle denoising

    Smoothing of ultrasound images using a new selective average filter

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    Ultrasound images are strongly affected by speckle noise making visual and computational analysis of the structures more difficult. Usually, the interference caused by this kind of noise reduces the efficiency of extraction and interpretation of the structural features of interest. In order to overcome this problem, a new method of selective smoothing based on average filtering and the radiation intensity of the image pixels is proposed. The main idea of this new method is to identify the pixels belonging to the borders of the structures of interest in the image, and then apply a reduced smoothing to these pixels, whilst applying more intense smoothing to the remaining pixels. Experimental tests were conducted using synthetic ultrasound images with speckle noisy added and real ultrasound images from the female pelvic cavity. The new smoothing method is able to perform selective smoothing in the input images, enhancing the transitions between the different structures presented. The results achieved are promising, as the evaluation analysis performed shows that the developed method is more efficient in removing speckle noise from the ultrasound images compared to other current methods. This improvement is because it is able to adapt the filtering process according to the image contents, thus avoiding the loss of any relevant structural features in the input images

    Speckle Noise Reduction in Medical Ultrasound Images Using Modelling of Shearlet Coefficients as a Nakagami Prior

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    The diagnosis of UltraSound (US) medical images is affected due to the presence of speckle noise. This noise degrades the diagnostic quality of US images by reducing small details and edges present in the image. This paper presents a novel method based on shearlet coefficients modeling of log-transformed US images. Noise-free log-transformed coefficients are modeled as Nakagami distribution and speckle noise coefficients are modeled as Gaussian distribution. Method of Log Cumulants (MoLC) and Method of Moments (MoM) are used for parameter estimation of Nakagami distribution and noise free shearlet coefficients respectively. Then noise free shearlet coefficients are obtained using Maximum a Posteriori (MaP) estimation of noisy coefficients. The experimental results were presented by performing various experiments on synthetic and real US images. Subjective and objective quality assessment of the proposed method is presented and is compared with six other existing methods. The effectiveness of the proposed method over other methods can be seen from the obtained results

    Towards to optimal wavelet denoising scheme - A novel spatial and volumetric mapping of wavelet-based biomedical data smoothing

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    Wavelet transformation is one of the most frequent procedures for data denoising, smoothing, decomposition, features extraction, and further related tasks. In order to perform such tasks, we need to select appropriate wavelet settings, including particular wavelet, decomposition level and other parameters, which form the wavelet transformation outputs. Selection of such parameters is a challenging area due to absence of versatile recommendation tools for suitable wavelet settings. In this paper, we propose a versatile recommendation system for prediction of suitable wavelet selection for data smoothing. The proposed system is aimed to generate spatial response matrix for selected wavelets and the decomposition levels. Such response enables the mapping of selected evaluation parameters, determining the efficacy of wavelet settings. The proposed system also enables tracking the dynamical noise influence in the context of Wavelet efficacy by using volumetric response. We provide testing on computed tomography (CT) and magnetic resonance (MR) image data and EMG signals mostly of musculoskeletal system to objectivise system usability for clinical data processing. The experimental testing is done by using evaluation parameters such is MSE (Mean Squared Error), ED (Euclidean distance) and Corr (Correlation index). We also provide the statistical analysis of the results based on Mann-Whitney test, which points out on statistically significant differences for individual Wavelets for the data corrupted with Salt and Pepper and Gaussian noise.Web of Science2018art. no. 530

    Study of Computational Image Matching Techniques: Improving Our View of Biomedical Image Data

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    Image matching techniques are proven to be necessary in various fields of science and engineering, with many new methods and applications introduced over the years. In this PhD thesis, several computational image matching methods are introduced and investigated for improving the analysis of various biomedical image data. These improvements include the use of matching techniques for enhancing visualization of cross-sectional imaging modalities such as Computed Tomography (CT) and Magnetic Resonance Imaging (MRI), denoising of retinal Optical Coherence Tomography (OCT), and high quality 3D reconstruction of surfaces from Scanning Electron Microscope (SEM) images. This work greatly improves the process of data interpretation of image data with far reaching consequences for basic sciences research. The thesis starts with a general notion of the problem of image matching followed by an overview of the topics covered in the thesis. This is followed by introduction and investigation of several applications of image matching/registration in biomdecial image processing: a) registration-based slice interpolation, b) fast mesh-based deformable image registration and c) use of simultaneous rigid registration and Robust Principal Component Analysis (RPCA) for speckle noise reduction of retinal OCT images. Moving towards a different notion of image matching/correspondence, the problem of view synthesis and 3D reconstruction, with a focus on 3D reconstruction of microscopic samples from 2D images captured by SEM, is considered next. Starting from sparse feature-based matching techniques, an extensive analysis is provided for using several well-known feature detector/descriptor techniques, namely ORB, BRIEF, SURF and SIFT, for the problem of multi-view 3D reconstruction. This chapter contains qualitative and quantitative comparisons in order to reveal the shortcomings of the sparse feature-based techniques. This is followed by introduction of a novel framework using sparse-dense matching/correspondence for high quality 3D reconstruction of SEM images. As will be shown, the proposed framework results in better reconstructions when compared with state-of-the-art sparse-feature based techniques. Even though the proposed framework produces satisfactory results, there is room for improvements. These improvements become more necessary when dealing with higher complexity microscopic samples imaged by SEM as well as in cases with large displacements between corresponding points in micrographs. Therefore, based on the proposed framework, a new approach is proposed for high quality 3D reconstruction of microscopic samples. While in case of having simpler microscopic samples the performance of the two proposed techniques are comparable, the new technique results in more truthful reconstruction of highly complex samples. The thesis is concluded with an overview of the thesis and also pointers regarding future directions of the research using both multi-view and photometric techniques for 3D reconstruction of SEM images
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