Wavelet-based motion artifact removal for electrodermal activity

Electrodermal activity (EDA) recording is a powerful, widely used tool for monitoring psychological or physiological arousal. However, analysis of EDA is hampered by its sensitivity to motion artifacts. We propose a method for removing motion artifacts from EDA, measured as skin conductance (SC), using a stationary wavelet transform (SWT). We modeled the wavelet coefficients as a Gaussian mixture distribution corresponding to the underlying skin conductance level (SCL) and skin conductance responses (SCRs). The goodness-of-fit of the model was validated on ambulatory SC data. We evaluated the proposed method in comparison with three previous approaches. Our method achieved a greater reduction of artifacts while retaining motion-artifact-free data

SENSE EPI reconstruction with 2D phase error correction and channel-wise noise removal

Nyquist ghost; Denoising; DiffusionFantasma de Nyquist; Eliminación de ruido; DifusiónFantasma de Nyquist; Eliminació de soroll; DifusióPurpose To develop a robust reconstruction pipeline for EPI data that enables 2D Nyquist phase error correction using sensitivity encoding without incurring major noise artifacts in low SNR data. Methods SENSE with 2D phase error correction (PEC-SENSE) was combined with channel-wise noise removal using Marcenko–Pastur principal component analysis (MPPCA) to simultaneously eliminate Nyquist ghost artifacts in EPI data and mitigate the noise amplification associated with phase correction using parallel imaging. The proposed pipeline (coined SPECTRE) was validated in phantom DW-EPI data using the accuracy and precision of diffusion metrics; ground truth values were obtained from data acquired with a spin echo readout. Results from the SPECTRE pipeline were compared against PEC-SENSE reconstructions with three alternate denoising strategies: (i) no denoising; (ii) denoising of magnitude data after image formation; (iii) denoising of complex data after image formation. SPECTRE was then tested using high -value (i.e., low SNR) diffusion data (up to  s/mm ) in four healthy subjects. Results Noise amplification associated with phase error correction incurred a 23% bias in phantom mean diffusivity (MD) measurements. Phantom MD estimates using the SPECTRE pipeline were within 8% of the ground truth value. In healthy volunteers, the SPECTRE pipeline visibly corrected Nyquist ghost artifacts and reduced associated noise amplification in high -value data. Conclusion The proposed reconstruction pipeline is effective in correcting low SNR data, and improves the accuracy and precision of derived diffusion metrics.EPSRC-funded UCL Centre for Doctoral Training in Medical Imaging, Grant/Award Number: EP/L016478/

Adaptive wavelet thresholding for image denoising using sure minimization and clustering of wavelet coefficients

Images and video are often coded using block-based discrete cosine transform (DCT) or discrete wavelet transform (DWT) which cause a great deal of visual distortions. In this paper, an extension of the intra-scale dependencies of wavelet coefficients is proposed to improve denoising performance. This method incorporates information on neighbouring wavelet coefficients that are inside of manually created clusters. Extensive experimental results are given to demonstrate the strength of the proposed method

Compressed Sensing Based Reconstruction Algorithm for X-ray Dose Reduction in Synchrotron Source Micro Computed Tomography

Synchrotron computed tomography requires a large number of angular projections to reconstruct tomographic images with high resolution for detailed and accurate diagnosis. However, this exposes the specimen to a large amount of x-ray radiation. Furthermore, this increases scan time and, consequently, the likelihood of involuntary specimen movements. One approach for decreasing the total scan time and radiation dose is to reduce the number of projection views needed to reconstruct the images. However, the aliasing artifacts appearing in the image due to the reduced number of projection data, visibly degrade the image quality. According to the compressed sensing theory, a signal can be accurately reconstructed from highly undersampled data by solving an optimization problem, provided that the signal can be sparsely represented in a predefined transform domain. Therefore, this thesis is mainly concerned with designing compressed sensing-based reconstruction algorithms to suppress aliasing artifacts while preserving spatial resolution in the resulting reconstructed image. First, the reduced-view synchrotron computed tomography reconstruction is formulated as a total variation regularized compressed sensing problem. The Douglas-Rachford Splitting and the randomized Kaczmarz methods are utilized to solve the optimization problem of the compressed sensing formulation. In contrast with the first part, where consistent simulated projection data are generated for image reconstruction, the reduced-view inconsistent real ex-vivo synchrotron absorption contrast micro computed tomography bone data are used in the second part. A gradient regularized compressed sensing problem is formulated, and the Douglas-Rachford Splitting and the preconditioned conjugate gradient methods are utilized to solve the optimization problem of the compressed sensing formulation. The wavelet image denoising algorithm is used as the post-processing algorithm to attenuate the unwanted staircase artifact generated by the reconstruction algorithm. Finally, a noisy and highly reduced-view inconsistent real in-vivo synchrotron phase-contrast computed tomography bone data are used for image reconstruction. A combination of prior image constrained compressed sensing framework, and the wavelet regularization is formulated, and the Douglas-Rachford Splitting and the preconditioned conjugate gradient methods are utilized to solve the optimization problem of the compressed sensing formulation. The prior image constrained compressed sensing framework takes advantage of the prior image to promote the sparsity of the target image. It may lead to an unwanted staircase artifact when applied to noisy and texture images, so the wavelet regularization is used to attenuate the unwanted staircase artifact generated by the prior image constrained compressed sensing reconstruction algorithm. The visual and quantitative performance assessments with the reduced-view simulated and real computed tomography data from canine prostate tissue, rat forelimb, and femoral cortical bone samples, show that the proposed algorithms have fewer artifacts and reconstruction errors than other conventional reconstruction algorithms at the same x-ray dose

Adaptive filtering techniques for acquisition noise and coding artifacts of digital pictures

The quality of digital pictures is often degraded by various processes (e.g, acquisition or capturing, compression, filtering process, transmission, etc). In digital image/video processing systems, random noise appearing in images is mainly generated during the capturing process; while the artifacts (or distortions) are generated in compression or filtering processes. This dissertation looks at digital image/video quality degradations with possible solution for post processing techniques for coding artifacts and acquisition noise reduction for images/videos. Three major issues associated with the image/video degradation are addressed in this work. The first issue is the temporal fluctuation artifact in digitally compressed videos. In the state-of-art video coding standard, H.264/AVC, temporal fluctuations are noticeable between intra picture frames or between an intra picture frame and neighbouring inter picture frames. To resolve this problem, a novel robust statistical temporal filtering technique is proposed. It utilises a re-descending robust statistical model with outlier rejection feature to reduce the temporal fluctuations while preserving picture details and motion sharpness. PSNR and sum of square difference (SSD) show improvement of proposed filters over other benchmark filters. Even for videos contain high motion, the proposed temporal filter shows good performances in fluctuation reduction and motion clarity preservation compared with other baseline temporal filters. The second issue concerns both the spatial and temporal artifacts (e.g, blocking, ringing, and temporal fluctuation artifacts) appearing in compressed video. To address this issue, a novel joint spatial and temporal filtering framework is constructed for artifacts reduction. Both the spatial and the temporal filters employ a re-descending robust statistical model (RRSM) in the filtering processes. The robust statistical spatial filter (RSSF) reduces spatial blocking and ringing artifacts whilst the robust statistical temporal filter (RSTF) suppresses the temporal fluctuations. Performance evaluations demonstrate that the proposed joint spatio-temporal filter is superior to H.264 loop filter in terms of spatial and temporal artifacts reduction and motion clarity preservation. The third issue is random noise, commonly modeled as mixed Gaussian and impulse noise (MGIN), which appears in image/video acquisition process. An effective method to estimate MGIN is through a robust estimator, median absolute deviation normalized (MADN). The MADN estimator is used to separate the MGIN model into impulse and additive Gaussian noise portion. Based on this estimation, the proposed filtering process is composed of a modified median filter for impulse noise reduction, and a DCT transform based denoising filter for additive Gaussian noise reduction. However, this DCT based denoising filter produces temporal fluctuations for videos. To solve this problem, a temporal filter is added to the filtering process. Therefore, another joint spatio-temporal filtering scheme is built to achieve the best visual quality of denoised videos. Extensive experiments show that the proposed joint spatio-temporal filtering scheme outperforms other benchmark filters in noise and distortions suppression