Melting and Rippling Phenomenan in Two Dimensional Crystals with localized bonding

We calculate Root Mean Square (RMS) deviations from equilibrium for atoms in a two dimensional crystal with local (e.g. covalent) bonding between close neighbors. Large scale Monte Carlo calculations are in good agreement with analytical results obtained in the harmonic approximation. When motion is restricted to the plane, we find a slow (logarithmic) increase in fluctuations of the atoms about their equilibrium positions as the crystals are made larger and larger. We take into account fluctuations perpendicular to the lattice plane, manifest as undulating ripples, by examining dual layer systems with coupling between the layers to impart local rigidly (i.e. as in sheets of graphene made stiff by their finite thickness). Surprisingly, we find a rapid divergence with increasing system size in the vertical mean square deviations, independent of the strength of the interplanar coupling. We consider an attractive coupling to a flat substrate, finding that even a weak attraction significantly limits the amplitude and average wavelength of the ripples. We verify our results are generic by examining a variety of distinct geometries, obtaining the same phenomena in each case.Comment: 17 pages, 28 figure

Symmetry adapted Assur decompositions

Assur graphs are a tool originally developed by mechanical engineers to decompose mechanisms for simpler analysis and synthesis. Recent work has connected these graphs to strongly directed graphs, and decompositions of the pinned rigidity matrix. Many mechanisms have initial configurations which are symmetric, and other recent work has exploited the orbit matrix as a symmetry adapted form of the rigidity matrix. This paper explores how the decomposition and analysis of symmetric frameworks and their symmetric motions can be supported by the new symmetry adapted tools.Comment: 40 pages, 22 figure

On the maximal number of real embeddings of minimally rigid graphs in R2\mathbb{R}^2, R3\mathbb{R}^3 and S2S^2

Rigidity theory studies the properties of graphs that can have rigid embeddings in a euclidean space $\mathbb{R}^d$ or on a sphere and which in addition satisfy certain edge length constraints. One of the major open problems in this field is to determine lower and upper bounds on the number of realizations with respect to a given number of vertices. This problem is closely related to the classification of rigid graphs according to their maximal number of real embeddings. In this paper, we are interested in finding edge lengths that can maximize the number of real embeddings of minimally rigid graphs in the plane, space, and on the sphere. We use algebraic formulations to provide upper bounds. To find values of the parameters that lead to graphs with a large number of real realizations, possibly attaining the (algebraic) upper bounds, we use some standard heuristics and we also develop a new method inspired by coupler curves. We apply this new method to obtain embeddings in $\mathbb{R}^3$. One of its main novelties is that it allows us to sample efficiently from a larger number of parameters by selecting only a subset of them at each iteration. Our results include a full classification of the 7-vertex graphs according to their maximal numbers of real embeddings in the cases of the embeddings in $\mathbb{R}^2$ and $\mathbb{R}^3$, while in the case of $S^2$ we achieve this classification for all 6-vertex graphs. Additionally, by increasing the number of embeddings of selected graphs, we improve the previously known asymptotic lower bound on the maximum number of realizations. The methods and the results concerning the spatial embeddings are part of the proceedings of ISSAC 2018 (Bartzos et al, 2018)

Folding of the triangular lattice in a discrete three-dimensional space: Density-matrix-renormalization-group study

Folding of the triangular lattice in a discrete three-dimensional space is investigated numerically. Such ``discrete folding'' has come under through theoretical investigation, since Bowick and co-worker introduced it as a simplified model for the crumpling of the phantom polymerized membranes. So far, it has been analyzed with the hexagon approximation of the cluster variation method (CVM). However, the possible systematic error of the approximation was not fully estimated; in fact, it has been known that the transfer-matrix calculation is limited in the tractable strip widths L \le 6. Aiming to surmount this limitation, we utilized the density-matrix renormalization group. Thereby, we succeeded in treating strip widths up to L=29 which admit reliable extrapolations to the thermodynamic limit. Our data indicate an onset of a discontinuous crumpling transition with the latent heat substantially larger than the CVM estimate. It is even larger than the latent heat of the planar (two dimensional) folding, as first noticed by the preceding CVM study. That is, contrary to our naive expectation, the discontinuous character of the transition is even promoted by the enlargement of the embedding-space dimensions. We also calculated the folding entropy, which appears to lie within the best analytical bound obtained previously via combinatorics arguments

Stress management in composite biopolymer networks

Living tissues show an extraordinary adaptiveness to strain, which is crucial for their proper biological functioning. The physical origin of this mechanical behaviour has been widely investigated using reconstituted networks of collagen fibres, the principal load-bearing component of tissues. However, collagen fibres in tissues are embedded in a soft hydrated polysaccharide matrix which generates substantial internal stresses whose effect on tissue mechanics is unknown. Here, by combining mechanical measurements and computer simulations, we show that networks composed of collagen fibres and a hyaluronan matrix exhibit synergistic mechanics characterized by an enhanced stiffness and delayed strain-stiffening. We demonstrate that the polysaccharide matrix has a dual effect on the composite response involving both internal stress and elastic reinforcement. Our findings elucidate how tissues can tune their strain-sensitivity over a wide range and provide a novel design principle for synthetic materials with programmable mechanical properties

Properties of Bott manifolds and cohomological rigidity

The cohomological rigidity problem for toric manifolds asks whether the cohomology ring of a toric manifold determines the topological type of the manifold. In this paper, we consider the problem with the class of one-twist Bott manifolds to get an affirmative answer to the problem. We also generalize the result to quasitoric manifolds. In doing so, we show that the twist number of a Bott manifold is well-defined and is equal to the cohomological complexity of the cohomology ring of the manifold. We also show that any cohomology Bott manifold is homeomorphic to a Bott manifold. All these results are also generalized to the case with $\mathbb Z_{(2)}$-coefficients, where $\mathbb Z_{(2)}$ is the localized ring at 2.Comment: 22 page