Remote detection of invasive alien species

The spread of invasive alien species (IAS) is recognized as the most severe threat to biodiversity outside of climate change and anthropogenic habitat destruction. IAS negatively impact ecosystems, local economies, and residents. They are especially problematic because once established, they give rise to positive feedbacks, increasing the likelihood of further invasions and spread. The integration of remote sensing (RS) to the study of invasion, in addition to contributing to our understanding of invasion processes and impacts to biodiversity, has enabled managers to monitor invasions and predict the spread of IAS, thus supporting biodiversity conservation and management action. This chapter focuses on RS capabilities to detect and monitor invasive plant species across terrestrial, riparian, aquatic, and human-modified ecosystems. All of these environments have unique species assemblages and their own optimal methodology for effective detection and mapping, which we discuss in detail

The Changing Matrix: Reforestation and Connectivity in a Tropical Habitat Corridor

In the last two decades, export-oriented crops and timber and fruit plantations have joined small-scale cultivation and pasture as important causes of tropical deforestation. Widespread conversion of tropical forest to agriculture threatens to isolate protected areas, which has led to efforts to maintain functional connectivity in landscapes between protected areas. Relatively few "landscape conservation" efforts have been assessed for their effect on deforestation, but advances in remote sensing now permit detailed monitoring of tropical land uses over time, including mapping of tree crops and plantations. This dissertation evaluates the long-term impact of forest conservation and reforestation policies on tropical forests in a habitat corridor. The following chapters test the capability of remote sensing to monitor tropical conservation efforts and assess whether landscape conservation policies can maintain forest cover and connectivity in the face of rapid agricultural expansion. Costa Rica has one of the most comprehensive landscape conservation policies in the tropics: a 1996 Forest Law banned deforestation and expanded payments for environmental services (PES) to protect forests and plant trees, prioritizing designated habitat corridors between protected areas. The long-term effect of the program on land-use transitions is not well known. To take advantage of this regional policy experiment, I used a time-series of five moderate-resolution Landsat images to track land-use change from 1986 to 2011in the oldest habitat corridor, the San Juan-La Selva Biological Corridor (SJLSBC). Forest conservation policies were associated with a 40% decline in deforestation after 1996 despite a doubling in the area of cropland in the last decade. The proportion of cropland derived from mature forest dropped from 16.4% to 1.9% after 1996, while one fifth of pasture expansion continued to be derived from mature forest. These results suggest that forest conservation policies can successfully lower deforestation, and that they can be more effective with large export producers than small-scale cattle producers. Tree plantations are an important component of Costa Rican PES, but knowledge of their distribution and contribution to connectivity in the corridor region is poor. After reviewing the remote sensing literature, I employed a novel integration of hyperspectral images and a Landsat time-series to create the first regional map of tropical tree plantation species. Including multitemporal data significantly improved overall hyperspectral map accuracy to 91%; the six tree plantation species were classified with 83% mean producer's accuracy. Non-native species made up 89% of tree plantations, and they were cleared more rapidly than native tree plantations and secondary forests. I combined existing land cover maps, field behavioral experiments, and a graph connectivity model to estimate whether landscape conservation policies increased connectivity for understory insectivorous birds, a representative forest-dependent group. The field playback experiments indicated both native and exotic tree plantations with a dense shrubby understory were acceptable dispersal habitat for all species, and that birds traveled readily near secondary forest edges but rarely into forested pasture. Graph model parameters were informed by these results. For all of these bird species, functional connectivity declined by 14-21% with only a 4.9% decline in forest area over time, implying that conservation policies have not caused a net increase in functional connectivity in the SJLSBC region. Despite making up 2% of the region, tree plantations had little effect on regional connectivity because of their placement in the landscape; we demonstrate that spatially-targeted reforestation of 0.1% of the region could increase connectivity by 1.8%. Collectively, the results presented in these chapters underline the potential and limitations of landscape conservation policies and corridor plans in the tropics; combining regulations and PES can lower deforestation over the medium-term, but increased enforcement, improved monitoring with remote sensing, and targeted conservation effort is needed to combat illegal deforestation and restore functional connectivity. Given numerous new tropical corridor and PES programs and the qualified successes of landscape conservation policies in Costa Rica and other tropical countries, our approach to the analysis can be applied to monitor and evaluate connectivity across the tropics

Remote sensing methods for biodiversity monitoring with emphasis on vegetation height estimation and habitat classification

Biodiversity is a principal factor for ecosystem stability and functioning, and the need for its protection has been identified as imperative globally. Remote sensing can contribute to timely and accurate monitoring of various elements related to biodiversity, but knowledge gap with user communities hinders its widespread operational use. This study advances biodiversity monitoring through earth observation data by initially identifying, reviewing, and proposing state-of-the-art remote sensing methods which can be used for the extraction of a number of widely adopted indicators of global biodiversity assessment. Then, a cost and resource effective approach is proposed for vegetation height estimation, using satellite imagery from very high resolution passive sensors. A number of texture features are extracted, based on local variance, entropy, and local binary patterns, and processed through several data processing, dimensionality reduction, and classification techniques. The approach manages to discriminate six vegetation height categories, useful for ecological studies, with accuracies over 90%. Thus, it offers an effective approach for landscape analysis, and habitat and land use monitoring, extending previous approaches as far as the range of height and vegetation species, synergies of multi-date imagery, data processing, and resource economy are regarded. Finally, two approaches are introduced to advance the state of the art in habitat classification using remote sensing data and pre-existing land cover information. The first proposes a methodology to express land cover information as numerical features and a supervised classification framework, automating the previous labour- and time-consuming rule-based approach used as reference. The second advances the state of the art incorporating Dempster–Shafer evidential theory and fuzzy sets, and proves successful in handling uncertainties from missing data or vague rules and offering wide user defined parameterization potential. Both approaches outperform the reference study in classification accuracy, proving promising for biodiversity monitoring, ecosystem preservation, and sustainability management tasks.Open Acces

Remote Sensing of Plant Biodiversity

At last, here it is. For some time now, the world has needed a text providing both a new theoretical foundation and practical guidance on how to approach the challenge of biodiversity decline in the Anthropocene. This is a global challenge demanding global approaches to understand its scope and implications. Until recently, we have simply lacked the tools to do so. We are now entering an era in which we can realistically begin to understand and monitor the multidimensional phenomenon of biodiversity at a planetary scale. This era builds upon three centuries of scientific research on biodiversity at site to landscape levels, augmented over the past two decades by airborne research platforms carrying spectrometers, lidars, and radars for larger-scale observations. Emerging international networks of fine-grain in-situ biodiversity observations complemented by space-based sensors offering coarser-grain imagery—but global coverage—of ecosystem composition, function, and structure together provide the information necessary to monitor and track change in biodiversity globally. This book is a road map on how to observe and interpret terrestrial biodiversity across scales through plants—primary producers and the foundation of the trophic pyramid. It honors the fact that biodiversity exists across different dimensions, including both phylogenetic and functional. Then, it relates these aspects of biodiversity to another dimension, the spectral diversity captured by remote sensing instruments operating at scales from leaf to canopy to biome. The biodiversity community has needed a Rosetta Stone to translate between the language of satellite remote sensing and its resulting spectral diversity and the languages of those exploring the phylogenetic diversity and functional trait diversity of life on Earth. By assembling the vital translation, this volume has globalized our ability to track biodiversity state and change. Thus, a global problem meets a key component of the global solution. The editors have cleverly built the book in three parts. Part 1 addresses the theory behind the remote sensing of terrestrial plant biodiversity: why spectral diversity relates to plant functional traits and phylogenetic diversity. Starting with first principles, it connects plant biochemistry, physiology, and macroecology to remotely sensed spectra and explores the processes behind the patterns we observe. Examples from the field demonstrate the rising synthesis of multiple disciplines to create a new cross-spatial and spectral science of biodiversity. Part 2 discusses how to implement this evolving science. It focuses on the plethora of novel in-situ, airborne, and spaceborne Earth observation tools currently and soon to be available while also incorporating the ways of actually making biodiversity measurements with these tools. It includes instructions for organizing and conducting a field campaign. Throughout, there is a focus on the burgeoning field of imaging spectroscopy, which is revolutionizing our ability to characterize life remotely. Part 3 takes on an overarching issue for any effort to globalize biodiversity observations, the issue of scale. It addresses scale from two perspectives. The first is that of combining observations across varying spatial, temporal, and spectral resolutions for better understanding—that is, what scales and how. This is an area of ongoing research driven by a confluence of innovations in observation systems and rising computational capacity. The second is the organizational side of the scaling challenge. It explores existing frameworks for integrating multi-scale observations within global networks. The focus here is on what practical steps can be taken to organize multi-scale data and what is already happening in this regard. These frameworks include essential biodiversity variables and the Group on Earth Observations Biodiversity Observation Network (GEO BON). This book constitutes an end-to-end guide uniting the latest in research and techniques to cover the theory and practice of the remote sensing of plant biodiversity. In putting it together, the editors and their coauthors, all preeminent in their fields, have done a great service for those seeking to understand and conserve life on Earth—just when we need it most. For if the world is ever to construct a coordinated response to the planetwide crisis of biodiversity loss, it must first assemble adequate—and global—measures of what we are losing

Derivation of forest inventory parameters from high-resolution satellite imagery for the Thunkel area, Northern Mongolia. A comparative study on various satellite sensors and data analysis techniques.

With the demise of the Soviet Union and the transition to a market economy starting in the 1990s, Mongolia has been experiencing dramatic changes resulting in social and economic disparities and an increasing strain on its natural resources. The situation is exacerbated by a changing climate, the erosion of forestry related administrative structures, and a lack of law enforcement activities. Mongolia’s forests have been afflicted with a dramatic increase in degradation due to human and natural impacts such as overexploitation and wildfire occurrences. In addition, forest management practices are far from being sustainable. In order to provide useful information on how to viably and effectively utilise the forest resources in the future, the gathering and analysis of forest related data is pivotal. Although a National Forest Inventory was conducted in 2016, very little reliable and scientifically substantiated information exists related to a regional or even local level. This lack of detailed information warranted a study performed in the Thunkel taiga area in 2017 in cooperation with the GIZ. In this context, we hypothesise that (i) tree species and composition can be identified utilising the aerial imagery, (ii) tree height can be extracted from the resulting canopy height model with accuracies commensurate with field survey measurements, and (iii) high-resolution satellite imagery is suitable for the extraction of tree species, the number of trees, and the upscaling of timber volume and basal area based on the spectral properties. The outcomes of this study illustrate quite clearly the potential of employing UAV imagery for tree height extraction (R2 of 0.9) as well as for species and crown diameter determination. However, in a few instances, the visual interpretation of the aerial photographs were determined to be superior to the computer-aided automatic extraction of forest attributes. In addition, imagery from various satellite sensors (e.g. Sentinel-2, RapidEye, WorldView-2) proved to be excellently suited for the delineation of burned areas and the assessment of tree vigour. Furthermore, recently developed sophisticated classifying approaches such as Support Vector Machines and Random Forest appear to be tailored for tree species discrimination (Overall Accuracy of 89%). Object-based classification approaches convey the impression to be highly suitable for very high-resolution imagery, however, at medium scale, pixel-based classifiers outperformed the former. It is also suggested that high radiometric resolution bears the potential to easily compensate for the lack of spatial detectability in the imagery. Quite surprising was the occurrence of dark taiga species in the riparian areas being beyond their natural habitat range. The presented results matrix and the interpretation key have been devised as a decision tool and/or a vademecum for practitioners. In consideration of future projects and to facilitate the improvement of the forest inventory database, the establishment of permanent sampling plots in the Mongolian taigas is strongly advised.2021-06-0

Remote Sensing of Plant Biodiversity

This Open Access volume aims to methodologically improve our understanding of biodiversity by linking disciplines that incorporate remote sensing, and uniting data and perspectives in the fields of biology, landscape ecology, and geography. The book provides a framework for how biodiversity can be detected and evaluated—focusing particularly on plants—using proximal and remotely sensed hyperspectral data and other tools such as LiDAR. The volume, whose chapters bring together a large cross-section of the biodiversity community engaged in these methods, attempts to establish a common language across disciplines for understanding and implementing remote sensing of biodiversity across scales. The first part of the book offers a potential basis for remote detection of biodiversity. An overview of the nature of biodiversity is described, along with ways for determining traits of plant biodiversity through spectral analyses across spatial scales and linking spectral data to the tree of life. The second part details what can be detected spectrally and remotely. Specific instrumentation and technologies are described, as well as the technical challenges of detection and data synthesis, collection and processing. The third part discusses spatial resolution and integration across scales and ends with a vision for developing a global biodiversity monitoring system. Topics include spectral and functional variation across habitats and biomes, biodiversity variables for global scale assessment, and the prospects and pitfalls in remote sensing of biodiversity at the global scale

Applications of Remote Sensing Data in Mapping of Forest Growing Stock and Biomass

This Special Issue (SI), entitled "Applications of Remote Sensing Data in Mapping of Forest Growing Stock and Biomass”, resulted from 13 peer-reviewed papers dedicated to Forestry and Biomass mapping, characterization and accounting. The papers' authors presented improvements in Remote Sensing processing techniques on satellite images, drone-acquired images and LiDAR images, both aerial and terrestrial. Regarding the images’ classification models, all authors presented supervised methods, such as Random Forest, complemented by GIS routines and biophysical variables measured on the field, which were properly georeferenced. The achieved results enable the statement that remote imagery could be successfully used as a data source for regression analysis and formulation and, in this way, used in forestry actions such as canopy structure analysis and mapping, or to estimate biomass. This collection of papers, presented in the form of a book, brings together 13 articles covering various forest issues and issues in forest biomass calculation, constituting an important work manual for those who use mixed GIS and RS techniques

The application of deep learning for remote sensing of soil organic carbon stocks distribution in South Africa.

Doctoral Degree. University of KwaZulu-Natal, Pietermaritzburg.Soil organic carbon (SOC) is a vital measure for ecosystem health and offers opportunities to understand carbon fluxes and associated implications. However, unprecedented anthropogenic disturbances have significantly altered SOC distribution across the globe, leading to considerable carbon losses. In addition, reliable SOC estimates, particularly over large spatial extents remain a major challenge due to among others limited sample points, quality of simulation data and suitable algorithms. Remote sensing (RS) approaches have emerged as a suitable alternative to field and laboratory SOC determination, especially at large spatial extent. Nevertheless, reliable determination of SOC distribution using RS data requires robust analytical approaches. Compared to linear and classical machine learning (ML) models, deep learning (DL) models offer a considerable improvement in data analysis due to their ability to extract more representative features and identify complex spatial patterns associated with big data. Hence, advancements in remote sensing, proliferation of big data, and deep learning architecture offer great potential for large-scale SOC mapping. However, there is paucity in literature on the application of DL-based remote sensing approaches for SOC prediction. To this end, this study is aimed at exploring DL-based approaches for the remote sensing of SOC stocks distribution across South Africa. The first objective sought to provide a synopsis of the use of traditional neural network (TNN) and DL-based remote sensing of SOC with emphasis on basic concepts, differences, similarities and limitations, while the second objective provided an in-depth review of the history, utility, challenges, and prospects of DL-based remote sensing approaches for mapping SOC. A quantitative evaluation between the use of TNN and DL frameworks was also conducted. Findings show that majority of published literature were conducted in the Northern Hemisphere while Africa have only four publications. Results also reveal that most studies adopted hyperspectral data, particularly spectrometers as compared to multispectral data. In comparison to DL (10%), TNN (90%) models were more commonly utilized in the literature; yet, DL models produced higher median accuracy (93%) than TNN (85%) models. The review concludes by highlighting future opportunities for retrieving SOC from remotely sensed data using DL frameworks. The third objective compared the accuracy of DL—deep neural network (DNN) model and a TNN—artificial neural network (ANN), as well as other popular classical ML models that include random forest (RF) and support vector machine (SVM), for national scale SOC mapping using Sentinel-3 data. With a root mean square error (RMSE) of 10.35 t/ha, the DNN model produced the best results, followed by RF (11.2 t/ha), ANN (11.6 t/ha), and SVM (13.6 t/ha). The DNN's analytical abilities, combined with its capacity to handle large amounts of data is a key advantage over other classical ML models. Having established the superiority of DL models over TNN and other classical models, the fourth objective focused on investigating SOC stocks distribution across South Africa’s major land uses, using Deep Neural Networks (DNN) and Sentinel-3 satellite data. Findings show that grasslands contributed the most to overall SOC stocks (31.36 %), while urban vegetation contributed the least (0.04%). Results also show that commercial (46.06 t/h) and natural (44.34 t/h) forests had better carbon sequestration capacity than other classes. These findings provide an important guideline for managing SOC stocks in South Africa, useful in climate change mitigation by promoting sustainable land-use practices. The fifth objective sought to determine the distribution of SOC within South Africa’s major biomes using remotely sensed-topo-climatic data and Concrete Autoencoder-Deep Neural Networks (CAE-DNN). Findings show that the CAE-DNN model (built from 26 selected variables) had the best accuracy of the DNNs examined, with an RMSE of 7.91 t/h. Soil organic carbon stock was also shown to be related to biome coverage, with the grassland (32.38%) and savanna (31.28%) biomes contributing the most to the overall SOC pool in South Africa. forests (44.12 t/h) and the Indian ocean coastal belt (43.05 t/h) biomes, despite having smaller footprints, have the highest SOC sequestration capacity. To increase SOC storage, it is recommended that degraded biomes be restored; however, a balance must be maintained between carbon sequestration capability, biodiversity health, and adequate provision of ecosystem services. The sixth objective sought to project the present SOC stocks in South Africa into the future (i.e. 2050). Soil organic carbon variations generated by projected climate change and land cover were mapped and analysed using a digital soil mapping (DSM) technique combined with space-for-time substitution (SFTS) procedures over South Africa through 2050. The potential SOC stocks variations across South Africa's major land uses were also assessed from current (2021) to future (2050). The first part of the study uses a Deep Neural Network (DNN) to estimate current SOC content (2021), while the second phase uses an average of five WorldClim General Circulation Models to project SOC to the future (2050) under four Shared Socio-economic Pathways (SSPs). Results show a general decline in projected future SOC stocks by 2050, ranging from 4.97 to 5.38 Pg, compared to estimated current stocks of 5.64 Pg. The findings are critical for government and policymakers in assessing the efficacy of current management systems in South Africa. Overall, this study provides a cost-effective framework for national scale mapping of SOC stocks, which is the largest terrestrial carbon pool using advanced DL-based remote sensing approach. These findings are valuable for designing appropriate management strategies to promote carbon uptake, soil quality, and measuring terrestrial ecosystem responses and feedbacks to climate change. This study is also the first DL-based remote sensing of SOC stocks distribution in South Africa

Remote Sensing in Mangroves

The book highlights recent advancements in the mapping and monitoring of mangrove forests using earth observation satellite data. New and historical satellite data and aerial photographs have been used to map the extent, change and bio-physical parameters, such as phenology and biomass. Research was conducted in different parts of the world. Knowledge and understanding gained from this book can be used for the sustainable management of mangrove forests of the worl