Mutual Mobile Membranes Systems with Surface Objects

In this paper we introduce mutual mobile membranes with surface objects, systems which have biological motivation. In P systems with mobile membranes with surface objects, a membrane may enter or exit another membrane. The second membrane just undergoes the action, meaning that it has no control on when the movement takes place. This kind of movement illustrates the lack of an agreement (synchronization) similar to an asynchronous evolution. In mutual mobile membranes with surface objects this aspect is adjusted: any movement takes place only if both participants agree by synchronizing their evolution. In membranes two kinds of competition can occur: resource competition and location competition. Resource competition refers to rules which request the same resources, and the available resources can only be allocated to some of the rules. Location competition refers to the movement of a membrane in the hierarchical structure of the membrane systems under the request of some conflict rules.We use the two variants of membrane systems in order to describe and explain these kinds of competition, and introduce synchronizing objects in mutual mobile membranes which will help to solve the resource and location competitions

Awakened oscillations in coupled consumer-resource pairs

The paper concerns two interacting consumer-resource pairs based on chemostat-like equations under the assumption that the dynamics of the resource is considerably slower than that of the consumer. The presence of two different time scales enables to carry out a fairly complete analysis of the problem. This is done by treating consumers and resources in the coupled system as fast-scale and slow-scale variables respectively and subsequently considering developments in phase planes of these variables, fast and slow, as if they are independent. When uncoupled, each pair has unique asymptotically stable steady state and no self-sustained oscillatory behavior (although damped oscillations about the equilibrium are admitted). When the consumer-resource pairs are weakly coupled through direct reciprocal inhibition of consumers, the whole system exhibits self-sustained relaxation oscillations with a period that can be significantly longer than intrinsic relaxation time of either pair. It is shown that the model equations adequately describe locally linked consumer-resource systems of quite different nature: living populations under interspecific interference competition and lasers coupled via their cavity losses.Comment: 31 pages, 8 figures 2 tables, 48 reference

The concept of microbial affinity for limiting nutrients in steady state and rhythmic systems

Thesis (Ph.D.) University of Alaska Fairbanks, 198

A Process Calculus for Spatially-explicit Ecological Models

We propose PALPS, a Process Algebra with Locations for Population Systems. PALPS allows us to produce spatially-explicit, individual-based models and to reason about their behavior. Our calculus has two levels: at the first level we may define the behavior of an individual of a population while, at the second level, we may specify a system as the collection of individuals of various species located in space, moving through their life cycle while changing their location, if they so wish, and interacting with each other in various ways such as preying on each other. Furthermore, we propose a probabilistic temporal logic for reasoning about the behavior of PALPS processes. We illustrate our framework via models of dispersal in metapopulations.Comment: In Proceedings MeCBIC 2012, arXiv:1211.347

Combined effect of bumetanide, bromide, and GABAergic agonists: An alternative treatment for intractable seizures

Univ Fed Sao Joao del Rei, Lab Neurociencia Expt & Computac, Programa Inst Bioengn, Sao Joao Del Rei, BrazilUniversidade Federal de São Paulo, Escola Paulista Med, Dept Expt Neurol, São Paulo, BrazilUniversidade Federal de São Paulo, Escola Paulista Med, Dept Fisiol, São Paulo, BrazilPontificia Univ Catolica Rio Grande do Su, Inst Cerebro, Porto Alegre, RS, BrazilUniversidade Federal de São Paulo, Escola Paulista Med, Dept Expt Neurol, São Paulo, BrazilUniversidade Federal de São Paulo, Escola Paulista Med, Dept Fisiol, São Paulo, BrazilWeb of Scienc

Environmental selection and resource allocation determine spatial patterns in picophytoplankton cell size

Here we describe a new trait-based model for cellular resource allocation that we use to investigate the relative importance of different drivers for small cell size in phytoplankton. Using the model, we show that increased investment in nonscalable structural components with decreasing cell size leads to a trade-off between cell size, nutrient and light affinity, and growth rate. Within the most extreme nutrient-limited, stratified environments, resource competition theory then predicts a trend toward larger minimum cell size with increasing depth. We demonstrate that this explains observed trends using a marine ecosystem model that represents selection and adaptation of a diverse community defined by traits for cell size and subcellular resource allocation. This framework for linking cellular physiology to environmental selection can be used to investigate the adaptive response of the marine microbial community to environmental conditions and the adaptive value of variations in cellular physiology