Hybrid Discrete Wavelet Transform and Gabor Filter Banks Processing for Features Extraction from Biomedical Images

A new methodology for automatic feature extraction from biomedical images and subsequent classification is presented. The approach exploits the spatial orientation of high-frequency textural features of the processed image as determined by a two-step process. First, the two-dimensional discrete wavelet transform(DWT) is applied to obtain the HH high-frequency subband image. Then, a Gabor filter bank is applied to the latter at different frequencies and spatial orientations to obtain new Gabor-filtered image whose entropy and uniformity are computed. Finally, the obtained statistics are fed to a support vector machine (SVM) binary classifier. The approach was validated on mammograms, retina, and brain magnetic resonance (MR) images.The obtained classification accuracies show better performance in comparison to common approaches that use only the DWT or Gabor filter banks for feature extraction

Similarity Measurement of Breast Cancer Mammographic Images Using Combination of Mesh Distance Fourier Transform and Global Features

Similarity measurement in breast cancer is an important aspect of determining the vulnerability of detected masses based on the previous cases. It is used to retrieve the most similar image for a given mammographic query image from a collection of previously archived images. By analyzing these results, doctors and radiologists can more accurately diagnose early-stage breast cancer and determine the best treatment. The direct result is better prognoses for breast cancer patients. Similarity measurement in images has always been a challenging task in the field of pattern recognition. A widely-adopted strategy in Content-Based Image Retrieval (CBIR) is comparison of local shape-based features of images. Contours summarize the orientations and sizes images, allowing for heuristic approach in measuring similarity between images. Similarly, global features of an image have the ability to generalize the entire object with a single vector which is also an important aspect of CBIR. The main objective of this paper is to enhance the similarity measurement between query images and database images so that the best match is chosen from the database for a particular query image, thus decreasing the chance of false positives. In this paper, a method has been proposed which compares both local and global features of images to determine their similarity. Three image filters are applied to make this comparison. First, we filter using the mesh distance Fourier descriptor (MDFD), which is based on the calculation of local features of the mammographic image. After this filter is applied, we retrieve the five most similar images from the database. Two additional filters are applied to the resulting image set to determine the best match. Experiments show that this proposed method overcomes shortcomings of existing methods, increasing accuracy of matches from 68% to 88%

Effects of discrete wavelet compression on automated mammographic shape recognition

At present early detection is critical for the cure of breast cancer. Mammography is a breast screening technique which can detect breast cancer at the earliest possible stage. Mammographic lesions are typically classified into three shape classes, namely round, nodular and stellate. Presently this classification is done by experienced radiologists. In order to increase the speed and decrease the cost of diagnosis, automated recognition systems are being developed. This study analyses an automated classification procedure and its sensitivity to wavelet based image compression; In this study, the mammographic shape images are compressed using discrete wavelet compression and then classified using statistical classification methods. First, one dimensional compression is done on the radial distance measure and the shape features are extracted. Second, linear discriminant analysis is used to compute the weightings of the features. Third, a minimum distance Euclidean classifier and the leave-one-out test method is used for classification. Lastly, a two dimensional compression is performed on the images, and the above process of feature extraction and classification is repeated. The results are compared with those obtained with uncompressed mammographic images

Wavelets and Imaging Informatics: A Review of the Literature

AbstractModern medicine is a field that has been revolutionized by the emergence of computer and imaging technology. It is increasingly difficult, however, to manage the ever-growing enormous amount of medical imaging information available in digital formats. Numerous techniques have been developed to make the imaging information more easily accessible and to perform analysis automatically. Among these techniques, wavelet transforms have proven prominently useful not only for biomedical imaging but also for signal and image processing in general. Wavelet transforms decompose a signal into frequency bands, the width of which are determined by a dyadic scheme. This particular way of dividing frequency bands matches the statistical properties of most images very well. During the past decade, there has been active research in applying wavelets to various aspects of imaging informatics, including compression, enhancements, analysis, classification, and retrieval. This review represents a survey of the most significant practical and theoretical advances in the field of wavelet-based imaging informatics

Wave-Atom and Cycle-Spinning-Based Noise Reduction in Mammography Images

Image denoising is crucial in medical image processing. Digital mammography depends significantly on de-noising for computer-aided-detection of malignant cells like Microcalcifications. In this work, we proposed an unique hybrid approach to reduce Gaussian noise in digital mammograms by combining the wave-atom translation and cycle spinning methods. Pictures denoised by thresholding of coefficients would produce pseudo-Gibbs events because wave atoms are not translationally invariant. Circular motion is applied to keep away the artefacts. Experimental results clearly establish that the method is effective at filtering out background noise while maintaining the integrity of edges and enhancing picture quality. Mini-Mias pictures with variable quantities of Gaussian Noise are used to evaluate and analyse the performance using peak signal-to-noise ratio and structural similarity index.  The provided technique outperforms several current filters in terms of evaluated results of peak signal-to-noise ratio and structural similarity index

Application of Wavelets and Principal Component Analysis in Image Query and Mammography

Breast cancer is currently one of the major causes of death for women in the U.S. Mammography is currently the most effective method for detection of breast cancer and early detection has proven to be an efficient tool to reduce the number of deaths. Mammography is the most demanding of all clinical imaging applications as it requires high contrast, high signal to noise ratio and resolution with minimal x-radiation. According to studies [36], 10% to 30% of women having breast cancer and undergoing mammography, have negative mammograms, i.e. are misdiagnosed. Furthermore, only 20%-40% of the women who undergo biopsy, have cancer. Biopsies are expensive, invasive and traumatic to the patient. The high rate of false positives is partly because of the difficulties in the diagnosis process and partly due to the fear of missing a cancer. These facts motivate research aimed to enhance the mammogram images (e.g. by enhancement of features such as clustered calcification regions which were found to be associated with breast cancer) , to provide CAD (Computer Aided Diagnostics) tools that can alert the radiologist to potentially malignant regions in the mammograms and to develope tools for automated classification of mammograms into benign and malignant classes. In this paper we apply wavelet and Principal Component analysis, including the approximate Karhunen Loeve aransform to mammographic images, to derive feature vectors used for classification of mammographic images from an early stage of malignancy. Another area where wavelet analysis was found useful, is the area of image query. Image query of large data bases must provide a fast and efficient search of the query image. Lately, a group of researchers developed an algorithm based on wavelet analysis that was found to provide fast and efficient search in large data bases. Their method overcomes some of the difficulties associated with previous approaches, but the search algorithm is sensitive to displacement and rotation of the query image due to the fact that wavelet analysis is not invariant under displacement and rotation. In this study we propose the integration of the Hotelling transform to improve on this sensitivity and provide some experimental results in the context of the standard alphabetic characters

Cancer diagnosis using deep learning: A bibliographic review

In this paper, we first describe the basics of the field of cancer diagnosis, which includes steps of cancer diagnosis followed by the typical classification methods used by doctors, providing a historical idea of cancer classification techniques to the readers. These methods include Asymmetry, Border, Color and Diameter (ABCD) method, seven-point detection method, Menzies method, and pattern analysis. They are used regularly by doctors for cancer diagnosis, although they are not considered very efficient for obtaining better performance. Moreover, considering all types of audience, the basic evaluation criteria are also discussed. The criteria include the receiver operating characteristic curve (ROC curve), Area under the ROC curve (AUC), F1 score, accuracy, specificity, sensitivity, precision, dice-coefficient, average accuracy, and Jaccard index. Previously used methods are considered inefficient, asking for better and smarter methods for cancer diagnosis. Artificial intelligence and cancer diagnosis are gaining attention as a way to define better diagnostic tools. In particular, deep neural networks can be successfully used for intelligent image analysis. The basic framework of how this machine learning works on medical imaging is provided in this study, i.e., pre-processing, image segmentation and post-processing. The second part of this manuscript describes the different deep learning techniques, such as convolutional neural networks (CNNs), generative adversarial models (GANs), deep autoencoders (DANs), restricted Boltzmann’s machine (RBM), stacked autoencoders (SAE), convolutional autoencoders (CAE), recurrent neural networks (RNNs), long short-term memory (LTSM), multi-scale convolutional neural network (M-CNN), multi-instance learning convolutional neural network (MIL-CNN). For each technique, we provide Python codes, to allow interested readers to experiment with the cited algorithms on their own diagnostic problems. The third part of this manuscript compiles the successfully applied deep learning models for different types of cancers. Considering the length of the manuscript, we restrict ourselves to the discussion of breast cancer, lung cancer, brain cancer, and skin cancer. The purpose of this bibliographic review is to provide researchers opting to work in implementing deep learning and artificial neural networks for cancer diagnosis a knowledge from scratch of the state-of-the-art achievements

Radon-Gabor Barcodes for Medical Image Retrieval

In recent years, with the explosion of digital images on the Web, content-based retrieval has emerged as a significant research area. Shapes, textures, edges and segments may play a key role in describing the content of an image. Radon and Gabor transforms are both powerful techniques that have been widely studied to extract shape-texture-based information. The combined Radon-Gabor features may be more robust against scale/rotation variations, presence of noise, and illumination changes. The objective of this paper is to harness the potentials of both Gabor and Radon transforms in order to introduce expressive binary features, called barcodes, for image annotation/tagging tasks. We propose two different techniques: Gabor-of-Radon-Image Barcodes (GRIBCs), and Guided-Radon-of-Gabor Barcodes (GRGBCs). For validation, we employ the IRMA x-ray dataset with 193 classes, containing 12,677 training images and 1,733 test images. A total error score as low as 322 and 330 were achieved for GRGBCs and GRIBCs, respectively. This corresponds to $\approx 81\%$ retrieval accuracy for the first hit.Comment: To appear in proceedings of the 23rd International Conference on Pattern Recognition (ICPR 2016), Cancun, Mexico, December 201