375 research outputs found
Cellular Automata Applications in Shortest Path Problem
Cellular Automata (CAs) are computational models that can capture the
essential features of systems in which global behavior emerges from the
collective effect of simple components, which interact locally. During the last
decades, CAs have been extensively used for mimicking several natural processes
and systems to find fine solutions in many complex hard to solve computer
science and engineering problems. Among them, the shortest path problem is one
of the most pronounced and highly studied problems that scientists have been
trying to tackle by using a plethora of methodologies and even unconventional
approaches. The proposed solutions are mainly justified by their ability to
provide a correct solution in a better time complexity than the renowned
Dijkstra's algorithm. Although there is a wide variety regarding the
algorithmic complexity of the algorithms suggested, spanning from simplistic
graph traversal algorithms to complex nature inspired and bio-mimicking
algorithms, in this chapter we focus on the successful application of CAs to
shortest path problem as found in various diverse disciplines like computer
science, swarm robotics, computer networks, decision science and biomimicking
of biological organisms' behaviour. In particular, an introduction on the first
CA-based algorithm tackling the shortest path problem is provided in detail.
After the short presentation of shortest path algorithms arriving from the
relaxization of the CAs principles, the application of the CA-based shortest
path definition on the coordinated motion of swarm robotics is also introduced.
Moreover, the CA based application of shortest path finding in computer
networks is presented in brief. Finally, a CA that models exactly the behavior
of a biological organism, namely the Physarum's behavior, finding the
minimum-length path between two points in a labyrinth is given.Comment: To appear in the book: Adamatzky, A (Ed.) Shortest path solvers. From
software to wetware. Springer, 201
Massively parallel computing on an organic molecular layer
Current computers operate at enormous speeds of ~10^13 bits/s, but their
principle of sequential logic operation has remained unchanged since the 1950s.
Though our brain is much slower on a per-neuron base (~10^3 firings/s), it is
capable of remarkable decision-making based on the collective operations of
millions of neurons at a time in ever-evolving neural circuitry. Here we use
molecular switches to build an assembly where each molecule communicates-like
neurons-with many neighbors simultaneously. The assembly's ability to
reconfigure itself spontaneously for a new problem allows us to realize
conventional computing constructs like logic gates and Voronoi decompositions,
as well as to reproduce two natural phenomena: heat diffusion and the mutation
of normal cells to cancer cells. This is a shift from the current static
computing paradigm of serial bit-processing to a regime in which a large number
of bits are processed in parallel in dynamically changing hardware.Comment: 25 pages, 6 figure
A guided tour of asynchronous cellular automata
Research on asynchronous cellular automata has received a great amount of
attention these last years and has turned to a thriving field. We survey the
recent research that has been carried out on this topic and present a wide
state of the art where computing and modelling issues are both represented.Comment: To appear in the Journal of Cellular Automat
Spatio-Temporal Patterns act as Computational Mechanisms governing Emergent behavior in Robotic Swarms
open access articleOur goal is to control a robotic swarm without removing its swarm-like nature. In other words, we aim to intrinsically control a robotic swarm emergent behavior. Past attempts at governing robotic swarms or their selfcoordinating emergent behavior, has proven ineffective, largely due to the swarm’s inherent randomness (making it difficult to predict) and utter simplicity (they lack a leader, any kind of centralized control, long-range communication, global knowledge, complex internal models and only operate on a couple of basic, reactive rules). The main problem is that emergent phenomena itself is not fully understood, despite being at the forefront of current research. Research into 1D and 2D Cellular Automata has uncovered a hidden computational layer which bridges the micromacro gap (i.e., how individual behaviors at the micro-level influence the global behaviors on the macro-level). We hypothesize that there also lie embedded computational mechanisms at the heart of a robotic swarm’s emergent behavior. To test this theory, we proceeded to simulate robotic swarms (represented as both particles and dynamic networks) and then designed local rules to induce various types of intelligent, emergent behaviors (as well as designing genetic algorithms to evolve robotic swarms with emergent behaviors). Finally, we analysed these robotic swarms and successfully confirmed our hypothesis; analyzing their developments and interactions over time revealed various forms of embedded spatiotemporal patterns which store, propagate and parallel process information across the swarm according to some internal, collision-based logic (solving the mystery of how simple robots are able to self-coordinate and allow global behaviors to emerge across the swarm)
An evolutionary approach to the identification of Cellular Automata based on partial observations
In this paper we consider the identification problem of Cellular Automata
(CAs). The problem is defined and solved in the context of partial observations
with time gaps of unknown length, i.e. pre-recorded, partial configurations of
the system at certain, unknown time steps. A solution method based on a
modified variant of a Genetic Algorithm (GA) is proposed and illustrated with
brief experimental results.Comment: IEEE CEC 201
CANA: A python package for quantifying control and canalization in Boolean Networks
Logical models offer a simple but powerful means to understand the complex
dynamics of biochemical regulation, without the need to estimate kinetic
parameters. However, even simple automata components can lead to collective
dynamics that are computationally intractable when aggregated into networks. In
previous work we demonstrated that automata network models of biochemical
regulation are highly canalizing, whereby many variable states and their
groupings are redundant (Marques-Pita and Rocha, 2013). The precise charting
and measurement of such canalization simplifies these models, making even very
large networks amenable to analysis. Moreover, canalization plays an important
role in the control, robustness, modularity and criticality of Boolean network
dynamics, especially those used to model biochemical regulation (Gates and
Rocha, 2016; Gates et al., 2016; Manicka, 2017). Here we describe a new
publicly-available Python package that provides the necessary tools to extract,
measure, and visualize canalizing redundancy present in Boolean network models.
It extracts the pathways most effective in controlling dynamics in these
models, including their effective graph and dynamics canalizing map, as well as
other tools to uncover minimum sets of control variables.Comment: Submitted to the Systems Biology section of Frontiers in Physiolog
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