245 research outputs found
Probabilistic Bisimulation: Naturally on Distributions
In contrast to the usual understanding of probabilistic systems as stochastic
processes, recently these systems have also been regarded as transformers of
probabilities. In this paper, we give a natural definition of strong
bisimulation for probabilistic systems corresponding to this view that treats
probability distributions as first-class citizens. Our definition applies in
the same way to discrete systems as well as to systems with uncountable state
and action spaces. Several examples demonstrate that our definition refines the
understanding of behavioural equivalences of probabilistic systems. In
particular, it solves a long-standing open problem concerning the
representation of memoryless continuous time by memory-full continuous time.
Finally, we give algorithms for computing this bisimulation not only for finite
but also for classes of uncountably infinite systems
Experimental Biological Protocols with Formal Semantics
Both experimental and computational biology is becoming increasingly
automated. Laboratory experiments are now performed automatically on
high-throughput machinery, while computational models are synthesized or
inferred automatically from data. However, integration between automated tasks
in the process of biological discovery is still lacking, largely due to
incompatible or missing formal representations. While theories are expressed
formally as computational models, existing languages for encoding and
automating experimental protocols often lack formal semantics. This makes it
challenging to extract novel understanding by identifying when theory and
experimental evidence disagree due to errors in the models or the protocols
used to validate them. To address this, we formalize the syntax of a core
protocol language, which provides a unified description for the models of
biochemical systems being experimented on, together with the discrete events
representing the liquid-handling steps of biological protocols. We present both
a deterministic and a stochastic semantics to this language, both defined in
terms of hybrid processes. In particular, the stochastic semantics captures
uncertainties in equipment tolerances, making it a suitable tool for both
experimental and computational biologists. We illustrate how the proposed
protocol language can be used for automated verification and synthesis of
laboratory experiments on case studies from the fields of chemistry and
molecular programming
Transient Reward Approximation for Continuous-Time Markov Chains
We are interested in the analysis of very large continuous-time Markov chains
(CTMCs) with many distinct rates. Such models arise naturally in the context of
reliability analysis, e.g., of computer network performability analysis, of
power grids, of computer virus vulnerability, and in the study of crowd
dynamics. We use abstraction techniques together with novel algorithms for the
computation of bounds on the expected final and accumulated rewards in
continuous-time Markov decision processes (CTMDPs). These ingredients are
combined in a partly symbolic and partly explicit (symblicit) analysis
approach. In particular, we circumvent the use of multi-terminal decision
diagrams, because the latter do not work well if facing a large number of
different rates. We demonstrate the practical applicability and efficiency of
the approach on two case studies.Comment: Accepted for publication in IEEE Transactions on Reliabilit
Model Reduction of Linear Switched Systems by Restricting Discrete Dynamics
We present a procedure for reducing the number of continuous states of
discrete-time linear switched systems, such that the reduced system has the
same behavior as the original system for a subset of switching sequences. The
proposed method is expected to be useful for abstraction based control
synthesis methods for hybrid systems
Max-plus algebra in the history of discrete event systems
This paper is a survey of the history of max-plus algebra and its role in the field of discrete event systems during the last three decades. It is based on the perspective of the authors but it covers a large variety of topics, where max-plus algebra plays a key role
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