National Center for Biomedical Ontology: Advancing biomedicine through structured organization of scientific knowledge

The National Center for Biomedical Ontology is a consortium that comprises leading informaticians, biologists, clinicians, and ontologists, funded by the National Institutes of Health (NIH) Roadmap, to develop innovative technology and methods that allow scientists to record, manage, and disseminate biomedical information and knowledge in machine-processable form. The goals of the Center are (1) to help unify the divergent and isolated efforts in ontology development by promoting high quality open-source, standards-based tools to create, manage, and use ontologies, (2) to create new software tools so that scientists can use ontologies to annotate and analyze biomedical data, (3) to provide a national resource for the ongoing evaluation, integration, and evolution of biomedical ontologies and associated tools and theories in the context of driving biomedical projects (DBPs), and (4) to disseminate the tools and resources of the Center and to identify, evaluate, and communicate best practices of ontology development to the biomedical community. Through the research activities within the Center, collaborations with the DBPs, and interactions with the biomedical community, our goal is to help scientists to work more effectively in the e-science paradigm, enhancing experiment design, experiment execution, data analysis, information synthesis, hypothesis generation and testing, and understand human disease

Benchmarking Summarizability Processing in XML Warehouses with Complex Hierarchies

Business Intelligence plays an important role in decision making. Based on data warehouses and Online Analytical Processing, a business intelligence tool can be used to analyze complex data. Still, summarizability issues in data warehouses cause ineffective analyses that may become critical problems to businesses. To settle this issue, many researchers have studied and proposed various solutions, both in relational and XML data warehouses. However, they find difficulty in evaluating the performance of their proposals since the available benchmarks lack complex hierarchies. In order to contribute to summarizability analysis, this paper proposes an extension to the XML warehouse benchmark (XWeB) with complex hierarchies. The benchmark enables us to generate XML data warehouses with scalable complex hierarchies as well as summarizability processing. We experimentally demonstrated that complex hierarchies can definitely be included into a benchmark dataset, and that our benchmark is able to compare two alternative approaches dealing with summarizability issues.Comment: 15th International Workshop on Data Warehousing and OLAP (DOLAP 2012), Maui : United States (2012

Complex Knowledge Base Question Answering: A Survey

Knowledge base question answering (KBQA) aims to answer a question over a knowledge base (KB). Early studies mainly focused on answering simple questions over KBs and achieved great success. However, their performance on complex questions is still far from satisfactory. Therefore, in recent years, researchers propose a large number of novel methods, which looked into the challenges of answering complex questions. In this survey, we review recent advances on KBQA with the focus on solving complex questions, which usually contain multiple subjects, express compound relations, or involve numerical operations. In detail, we begin with introducing the complex KBQA task and relevant background. Then, we describe benchmark datasets for complex KBQA task and introduce the construction process of these datasets. Next, we present two mainstream categories of methods for complex KBQA, namely semantic parsing-based (SP-based) methods and information retrieval-based (IR-based) methods. Specifically, we illustrate their procedures with flow designs and discuss their major differences and similarities. After that, we summarize the challenges that these two categories of methods encounter when answering complex questions, and explicate advanced solutions and techniques used in existing work. Finally, we conclude and discuss several promising directions related to complex KBQA for future research.Comment: 20 pages, 4 tables, 7 figures. arXiv admin note: text overlap with arXiv:2105.1164

An adaptive technique for content-based image retrieval

We discuss an adaptive approach towards Content-Based Image Retrieval. It is based on the Ostensive Model of developing information needs—a special kind of relevance feedback model that learns from implicit user feedback and adds a temporal notion to relevance. The ostensive approach supports content-assisted browsing through visualising the interaction by adding user-selected images to a browsing path, which ends with a set of system recommendations. The suggestions are based on an adaptive query learning scheme, in which the query is learnt from previously selected images. Our approach is an adaptation of the original Ostensive Model based on textual features only, to include content-based features to characterise images. In the proposed scheme textual and colour features are combined using the Dempster-Shafer theory of evidence combination. Results from a user-centred, work-task oriented evaluation show that the ostensive interface is preferred over a traditional interface with manual query facilities. This is due to its ability to adapt to the user's need, its intuitiveness and the fluid way in which it operates. Studying and comparing the nature of the underlying information need, it emerges that our approach elicits changes in the user's need based on the interaction, and is successful in adapting the retrieval to match the changes. In addition, a preliminary study of the retrieval performance of the ostensive relevance feedback scheme shows that it can outperform a standard relevance feedback strategy in terms of image recall in category search

A Look Back on the XML Benchmark Project

The XML Benchmark Project was started to provide a framework for evaluating the interplay of XML technologies and Database Management Systems. The benchmark lays emphasis on engineering aspects as well as on performance of the query processor. In this chapter the authors present a quick overview of the benchmark and point at some of the experience they gathered during the design of the benchmark and while running it on a variety of platforms. Since the benchmark was designed early in the evolution of XML, our experiences also reflect how the perception of XML changed during the three years that have passed since we started working on the subject. The chapter comprises an overview of the benchmark as well as discussions of some lessons learned

05501 Abstracts Collection -- Automatic Performance Analysis

From 12.12.05 to 16.12.05, the Dagstuhl Seminar 05501 ``Automatic Performance Analysis\u27\u27 was held in the International Conference and Research Center (IBFI), Schloss Dagstuhl. During the seminar, several participants presented their current research, and ongoing work and open problems were discussed. Abstracts of the presentations given during the seminar as well as abstracts of seminar results and ideas are put together in this paper. The first section describes the seminar topics and goals in general. Links to extended abstracts or full papers are provided, if available

NASA RECON: Course Development, Administration, and Evaluation

The R and D activities addressing the development, administration, and evaluation of a set of transportable, college-level courses to educate science and engineering students in the effective use of automated scientific and technical information storage and retrieval systems, and, in particular, in the use of the NASA RECON system, are discussed. The long-range scope and objectives of these contracted activities are overviewed and the progress which has been made toward these objectives during FY 1983-1984 is highlighted. In addition, the results of a survey of 237 colleges and universities addressing course needs are presented

Peer-to-Peer Networks and Computation: Current Trends and Future Perspectives

This research papers examines the state-of-the-art in the area of P2P networks/computation. It attempts to identify the challenges that confront the community of P2P researchers and developers, which need to be addressed before the potential of P2P-based systems, can be effectively realized beyond content distribution and file-sharing applications to build real-world, intelligent and commercial software systems. Future perspectives and some thoughts on the evolution of P2P-based systems are also provided