Selective replicated declustering for arbitrary queries

Data declustering is used to minimize query response times in data intensive applications. In this technique, query retrieval process is parallelized by distributing the data among several disks and it is useful in applications such as geographic information systems that access huge amounts of data. Declustering with replication is an extension of declustering with possible data replicas in the system. Many replicated declustering schemes have been proposed. Most of these schemes generate two or more copies of all data items. However, some applications have very large data sizes and even having two copies of all data items may not be feasible. In such systems selective replication is a necessity. Furthermore, existing replication schemes are not designed to utilize query distribution information if such information is available. In this study we propose a replicated declustering scheme that decides both on the data items to be replicated and the assignment of all data items to disks when there is limited replication capacity. We make use of available query information in order to decide replication and partitioning of the data and try to optimize aggregate parallel response time. We propose and implement a Fiduccia-Mattheyses-like iterative improvement algorithm to obtain a two-way replicated declustering and use this algorithm in a recursive framework to generate a multi-way replicated declustering. Experiments conducted with arbitrary queries on real datasets show that, especially for low replication constraints, the proposed scheme yields better performance results compared to existing replicated declustering schemes. © 2009 Springer

A Survey on Array Storage, Query Languages, and Systems

Since scientific investigation is one of the most important providers of massive amounts of ordered data, there is a renewed interest in array data processing in the context of Big Data. To the best of our knowledge, a unified resource that summarizes and analyzes array processing research over its long existence is currently missing. In this survey, we provide a guide for past, present, and future research in array processing. The survey is organized along three main topics. Array storage discusses all the aspects related to array partitioning into chunks. The identification of a reduced set of array operators to form the foundation for an array query language is analyzed across multiple such proposals. Lastly, we survey real systems for array processing. The result is a thorough survey on array data storage and processing that should be consulted by anyone interested in this research topic, independent of experience level. The survey is not complete though. We greatly appreciate pointers towards any work we might have forgotten to mention.Comment: 44 page

Utilizing query logs for data replication and placement in big data applications

Ankara : The Department of Computer Engineering and the Graduate School of Engineering and Science of Bilkent University, 2012.Thesis (Ph. D.) -- Bilkent University, 2012.Includes bibliographical refences.The growth in the amount of data in todays computing problems and the level of parallelism dictated by the large-scale computing economics necessitates highlevel parallelism for many applications. This parallelism is generally achieved via data-parallel solutions that require effective data clustering (partitioning) or declustering schemes (depending on the application requirements). In addition to data partitioning/declustering, data replication, which is used for data availability and increased performance, has also become an inherent feature of many applications. The data partitioning/declustering and data replication problems are generally addressed separately. This thesis is centered around the idea of performing data replication and data partitioning/declustering simultenously to obtain replicated data distributions that yield better parallelism. To this end, we utilize query-logs to propose replicated data distribution solutions and extend the well known Fiduccia-Mattheyses (FM) iterative improvement algorithm so that it can be used to generate replicated partitioning/declustering of data. For the replicated declustering problem, we propose a novel replicated declustering scheme that utilizes query logs to improve the performance of a parallel database system. We also extend our replicated declustering scheme and propose a novel replicated re-declustering scheme such that in the face of drastic query pattern changes or server additions/removals from the parallel database system, new declustering solutions that require low migration overheads can be computed. For the replicated partitioning problem, we show how to utilize an effective single-phase replicated partitioning solution in two well-known applications (keyword-based search and Twitter). For these applications, we provide the algorithmic solutions we had to devise for solving the problems that replication brings, the engineering decisions we made so as to obtain the greatest benefits from the proposed data distribution, and the implementation details for realistic systems. Obtained results indicate that utilizing query-logs and performing replication and partitioning/declustering in a single phase improves parallel performance.Türk, AtaPh.D

Controlling Disk Contention for Parallel Query Processing in Shared Disk Database Systems

Shared Disk database systems offer a high flexibility for parallel transaction and query processing. This is because each node can process any transaction, query or subquery because it has access to the entire database. Compared to Shared Nothing, this is particularly advantageous for scan queries for which the degree of intra-query parallelism as well as the scan processors themselves can dynamically be chosen. On the other hand, there is the danger of disk contention between subqueries, in particular for index scans. We present a detailed simulation study to analyze the effectiveness of parallel scan processing in Shared Disk database systems. In particular, we investigate the relationship between the degree of declustering and the degree of scan parallelism for relation scans, clustered index scans, and non-clustered index scans. Furthermore, we study the usefulness of disk caches and prefetching for limiting disk contention. Finally, we show the importance of dynamically choosing the degree of scan parallelism to control disk contention in multi-user mode

On Disk Allocation of Intermediate Query Results in Parallel Database Systems

For complex queries in parallel database systems, substantial amounts of data must be redistributed between operators executed on different processing nodes. Frequently, such intermediate results cannot be held in main memory and must be stored on disk. To limit the ensuing performance penalty, a data allocation must be found that supports parallel I/O to the greatest possible extent. In this paper, we propose declustering even self-contained units of temporary data processed in a single operation (such as individual buckets of parallel hash joins) across multiple disks. Using a suitable analytical model, we find that the improvement of parallel I/O outweighs the penalty of increased fragmentation

Partial Replica Location And Selection For Spatial Datasets

As the size of scientific datasets continues to grow, we will not be able to store enormous datasets on a single grid node, but must distribute them across many grid nodes. The implementation of partial or incomplete replicas, which represent only a subset of a larger dataset, has been an active topic of research. Partial Spatial Replicas extend this functionality to spatial data, allowing us to distribute a spatial dataset in pieces over several locations. We investigate solutions to the partial spatial replica selection problems. First, we describe and develop two designs for an Spatial Replica Location Service (SRLS), which must return the set of replicas that intersect with a query region. Integrating a relational database, a spatial data structure and grid computing software, we build a scalable solution that works well even for several million replicas. In our SRLS, we have improved performance by designing a R-tree structure in the backend database, and by aggregating several queries into one larger query, which reduces overhead. We also use the Morton Space-filling Curve during R-tree construction, which improves spatial locality. In addition, we describe R-tree Prefetching(RTP), which effectively utilizes the modern multi-processor architecture. Second, we present and implement a fast replica selection algorithm in which a set of partial replicas is chosen from a set of candidates so that retrieval performance is maximized. Using an R-tree based heuristic algorithm, we achieve O(n log n) complexity for this NP-complete problem. We describe a model for disk access performance that takes filesystem prefetching into account and is sufficiently accurate for spatial replica selection. Making a few simplifying assumptions, we present a fast replica selection algorithm for partial spatial replicas. The algorithm uses a greedy approach that attempts to maximize performance by choosing a collection of replica subsets that allow fast data retrieval by a client machine. Experiments show that the performance of the solution found by our algorithm is on average always at least 91% and 93.4% of the performance of the optimal solution in 4-node and 8-node tests respectively

Reducing the Overhead of Memory Space, Network Communication and Disk I/O for Analytic Frameworks in Big Data Ecosystem

To facilitate big data processing, many distributed analytic frameworks and storage systems such as Apache Hadoop, Apache Hama, Apache Spark and Hadoop Distributed File System (HDFS) have been developed. Currently, many researchers are conducting research to either make them more scalable or enabling them to support more analysis applications. In my PhD study, I conducted three main works in this topic, which are minimizing the communication delay in Apache Hama, minimizing the memory space and computational overhead in HDFS and minimizing the disk I/O overhead for approximation applications in Hadoop ecosystem. Specifically, In Apache Hama, communication delay makes up a large percentage of the overall graph processing time. While most recent research has focused on reducing the number of network messages, we add a runtime communication and computation scheduler to overlap them as much as possible. As a result, communication delay can be mitigated. In HDFS, the block location table and its corresponding maintenance could occupy more than half of the memory space and 30% of processing capacity in master node, which severely limit the scalability and performance of master node. We propose Deister that uses deterministic mathematical calculations to eliminate the huge table for storing the block locations and its corresponding maintenance. My third work proposes to enable both efficient and accurate approximations on arbitrary sub-datasets of a large dataset. Existing offline sampling based approximation systems are not adaptive to dynamic query workloads and online sampling based approximation systems suffer from low I/O efficiency and poor estimation accuracy. Therefore, we develop a distribution aware method called Sapprox. Our idea is to collect the occurrences of a sub-dataset at each logical partition of a dataset (storage distribution) in the distributed system at a very small cost, and make good use of such information to facilitate online sampling