GraphX: Unifying Data-Parallel and Graph-Parallel Analytics

From social networks to language modeling, the growing scale and importance of graph data has driven the development of numerous new graph-parallel systems (e.g., Pregel, GraphLab). By restricting the computation that can be expressed and introducing new techniques to partition and distribute the graph, these systems can efficiently execute iterative graph algorithms orders of magnitude faster than more general data-parallel systems. However, the same restrictions that enable the performance gains also make it difficult to express many of the important stages in a typical graph-analytics pipeline: constructing the graph, modifying its structure, or expressing computation that spans multiple graphs. As a consequence, existing graph analytics pipelines compose graph-parallel and data-parallel systems using external storage systems, leading to extensive data movement and complicated programming model. To address these challenges we introduce GraphX, a distributed graph computation framework that unifies graph-parallel and data-parallel computation. GraphX provides a small, core set of graph-parallel operators expressive enough to implement the Pregel and PowerGraph abstractions, yet simple enough to be cast in relational algebra. GraphX uses a collection of query optimization techniques such as automatic join rewrites to efficiently implement these graph-parallel operators. We evaluate GraphX on real-world graphs and workloads and demonstrate that GraphX achieves comparable performance as specialized graph computation systems, while outperforming them in end-to-end graph pipelines. Moreover, GraphX achieves a balance between expressiveness, performance, and ease of use

Universal Workload-based Graph Partitioning and Storage Adaption for Distributed RDF Stores

The publication of machine-readable information has been significantly increasing both in the magnitude and complexity of the embedded relations. The Resource Description Framework(RDF) plays a big role in modeling and linking web data and their relations. In line with that important role, dedicated systems were designed to store and query the RDF data using a special queering language called SPARQL similar to the classic SQL. However, due to the high size of the data, several federated working nodes were used to host a distributed RDF store. The data needs to be partitioned, assigned, and stored in each working node. After partitioning, some of the data needs to be replicated in order to avoid the communication cost, and balance the loads for better system throughput. Since replications require more storage space, the important two questions are: what data to replicate? And how much? The answer to the second question is related to other storage-space requirements at each working node like indexes and cache. In order to efficiently answer SPARQL queries, each working node needs to put its share of data into multiple indexes. Those indexes have a data-wide size and consume a considerable amount of storage space. In this context, the same two questions about replications are also raised about indexes. The third storage-consuming structure is the join cache. It is a special index where the frequent join results are cached and save a considerable amount of running time on the cost of high storage space consumption. Again, the same two questions of replication and indexes are applicable to the join-cache. In this thesis, we present a universal adaption approach to the storage of a distributed RDF store. The system aims to find optimal data assignments to the different indexes, replications, and join cache within the limited storage space. To achieve this, we present a cost model based on the workload that often contains frequent patterns. The workload is dynamically analyzed to evaluate predefined rules. Those rules tell the system about the benefits and costs of assigning which data to what structure. The objective is to have better query execution time. Besides the storage adaption, the system adapts its processing resources with the queries' arrival rate. The aim of this adaption is to have better parallelization per query while still provides high system throughput

One-loop diagrams in the Random Euclidean Matching Problem

The matching problem is a notorious combinatorial optimization problem that has attracted for many years the attention of the statistical physics community. Here we analyze the Euclidean version of the problem, i.e. the optimal matching problem between points randomly distributed on a $d$-dimensional Euclidean space, where the cost to minimize depends on the points' pairwise distances. Using Mayer's cluster expansion we write a formal expression for the replicated action that is suitable for a saddle point computation. We give the diagrammatic rules for each term of the expansion, and we analyze in detail the one-loop diagrams. A characteristic feature of the theory, when diagrams are perturbatively computed around the mean field part of the action, is the vanishing of the mass at zero momentum. In the non-Euclidean case of uncorrelated costs instead, we predict and numerically verify an anomalous scaling for the sub-sub-leading correction to the asymptotic average cost.Comment: 17 pages, 7 figure

The OTree: multidimensional indexing with efficient data sampling for HPC

Spatial big data is considered an essential trend in future scientific and business applications. Indeed, research instruments, medical devices, and social networks generate hundreds of petabytes of spatial data per year. However, many authors have pointed out that the lack of specialized frameworks for multidimensional Big Data is limiting possible applications and precluding many scientific breakthroughs. Paramount in achieving High-Performance Data Analytics is to optimize and reduce the I/O operations required to analyze large data sets. To do so, we need to organize and index the data according to its multidimensional attributes. At the same time, to enable fast and interactive exploratory analysis, it is vital to generate approximate representations of large datasets efficiently. In this paper, we propose the Outlook Tree (or OTree), a novel Multidimensional Indexing with efficient data Sampling (MIS) algorithm. The OTree enables exploratory analysis of large multidimensional datasets with arbitrary precision, a vital missing feature in current distributed data management solutions. Our algorithm reduces the indexing overhead and achieves high performance even for write-intensive HPC applications. Indeed, we use the OTree to store the scientific results of a study on the efficiency of drug inhalers. Then we compare the OTree implementation on Apache Cassandra, named Qbeast, with PostgreSQL and plain storage. Lastly, we demonstrate that our proposal delivers better performance and scalability.Peer ReviewedPostprint (author's final draft

Choosing the proper link function for binary data

textSince generalized linear model (GLM) with binary response variable is widely used in many disciplines, many efforts have been made to construct a fit model. However, little attention is paid to the link functions, which play a critical role in GLM model. In this article, we compared three link functions and evaluated different model selection methods based on these three link functions. Also, we provided some suggestions on how to choose the proper link function for binary data.Statistic

Split and Migrate: Resource-Driven Placement and Discovery of Microservices at the Edge

Microservices architectures combine the use of fine-grained and independently-scalable services with lightweight communication protocols, such as REST calls over HTTP. Microservices bring flexibility to the development and deployment of application back-ends in the cloud. Applications such as collaborative editing tools require frequent interactions between the front-end running on users\u27 machines and a back-end formed of multiple microservices. User-perceived latencies depend on their connection to microservices, but also on the interaction patterns between these services and their databases. Placing services at the edge of the network, closer to the users, is necessary to reduce user-perceived latencies. It is however difficult to decide on the placement of complete stateful microservices at one specific core or edge location without trading between a latency reduction for some users and a latency increase for the others. We present how to dynamically deploy microservices on a combination of core and edge resources to systematically reduce user-perceived latencies. Our approach enables the split of stateful microservices, and the placement of the resulting splits on appropriate core and edge sites. Koala, a decentralized and resource-driven service discovery middleware, enables REST calls to reach and use the appropriate split, with only minimal changes to a legacy microservices application. Locality awareness using network coordinates further enables to automatically migrate services split and follow the location of the users. We confirm the effectiveness of our approach with a full prototype and an application to ShareLatex, a microservices-based collaborative editing application