The OTree: multidimensional indexing with efficient data sampling for HPC

Spatial big data is considered an essential trend in future scientific and business applications. Indeed, research instruments, medical devices, and social networks generate hundreds of petabytes of spatial data per year. However, many authors have pointed out that the lack of specialized frameworks for multidimensional Big Data is limiting possible applications and precluding many scientific breakthroughs. Paramount in achieving High-Performance Data Analytics is to optimize and reduce the I/O operations required to analyze large data sets. To do so, we need to organize and index the data according to its multidimensional attributes. At the same time, to enable fast and interactive exploratory analysis, it is vital to generate approximate representations of large datasets efficiently. In this paper, we propose the Outlook Tree (or OTree), a novel Multidimensional Indexing with efficient data Sampling (MIS) algorithm. The OTree enables exploratory analysis of large multidimensional datasets with arbitrary precision, a vital missing feature in current distributed data management solutions. Our algorithm reduces the indexing overhead and achieves high performance even for write-intensive HPC applications. Indeed, we use the OTree to store the scientific results of a study on the efficiency of drug inhalers. Then we compare the OTree implementation on Apache Cassandra, named Qbeast, with PostgreSQL and plain storage. Lastly, we demonstrate that our proposal delivers better performance and scalability.Peer ReviewedPostprint (author's final draft

Middleware-based Database Replication: The Gaps between Theory and Practice

The need for high availability and performance in data management systems has been fueling a long running interest in database replication from both academia and industry. However, academic groups often attack replication problems in isolation, overlooking the need for completeness in their solutions, while commercial teams take a holistic approach that often misses opportunities for fundamental innovation. This has created over time a gap between academic research and industrial practice. This paper aims to characterize the gap along three axes: performance, availability, and administration. We build on our own experience developing and deploying replication systems in commercial and academic settings, as well as on a large body of prior related work. We sift through representative examples from the last decade of open-source, academic, and commercial database replication systems and combine this material with case studies from real systems deployed at Fortune 500 customers. We propose two agendas, one for academic research and one for industrial R&D, which we believe can bridge the gap within 5-10 years. This way, we hope to both motivate and help researchers in making the theory and practice of middleware-based database replication more relevant to each other.Comment: 14 pages. Appears in Proc. ACM SIGMOD International Conference on Management of Data, Vancouver, Canada, June 200

The Architecture of an Autonomic, Resource-Aware, Workstation-Based Distributed Database System

Distributed software systems that are designed to run over workstation machines within organisations are termed workstation-based. Workstation-based systems are characterised by dynamically changing sets of machines that are used primarily for other, user-centric tasks. They must be able to adapt to and utilize spare capacity when and where it is available, and ensure that the non-availability of an individual machine does not affect the availability of the system. This thesis focuses on the requirements and design of a workstation-based database system, which is motivated by an analysis of existing database architectures that are typically run over static, specially provisioned sets of machines. A typical clustered database system -- one that is run over a number of specially provisioned machines -- executes queries interactively, returning a synchronous response to applications, with its data made durable and resilient to the failure of machines. There are no existing workstation-based databases. Furthermore, other workstation-based systems do not attempt to achieve the requirements of interactivity and durability, because they are typically used to execute asynchronous batch processing jobs that tolerate data loss -- results can be re-computed. These systems use external servers to store the final results of computations rather than workstation machines. This thesis describes the design and implementation of a workstation-based database system and investigates its viability by evaluating its performance against existing clustered database systems and testing its availability during machine failures.Comment: Ph.D. Thesi

A Critical Comparison of NOSQL Databases in the Context of Acid and Base

This starred paper will discuss two major types of databases – Relational and NOSQL – and analyze the different models used by these databases. In particular, it will focus on the choice of the ACID or BASE model to be more appropriate for the NOSQL databases. NOSQL databases use the BASE model because they do not usually comply with ACID model, something used by relational databases. However, some NOSQL databases adopt additional approaches and techniques to make the database comply with ACID model. In this light, this paper will explore some of these approaches and explain why NOSQL databases cannot simply follow the ACID model. What are the reasons behind the extensive use of the BASE model? What are some of the advantages and disadvantages of not using ACID? Particular attention will be paid to analyze if one model is better or superior to the other. These questions will be answered by reviewing existing research conducted on some of the NOSQL databases such as Cassandra, DynamoDB, MongoDB and Neo4j