Observations on computational methodologies for use in large-scale, gradient-based, multidisciplinary design incorporating advanced CFD codes

How a combination of various computational methodologies could reduce the enormous computational costs envisioned in using advanced CFD codes in gradient based optimized multidisciplinary design (MdD) procedures is briefly outlined. Implications of these MdD requirements upon advanced CFD codes are somewhat different than those imposed by a single discipline design. A means for satisfying these MdD requirements for gradient information is presented which appear to permit: (1) some leeway in the CFD solution algorithms which can be used; (2) an extension to 3-D problems; and (3) straightforward use of other computational methodologies. Many of these observations have previously been discussed as possibilities for doing parts of the problem more efficiently; the contribution here is observing how they fit together in a mutually beneficial way

An extensive English language bibliography on graph theory and its applications, supplement 1

Graph theory and its applications - bibliography, supplement

Design and optimization of a portable LQCD Monte Carlo code using OpenACC

The present panorama of HPC architectures is extremely heterogeneous, ranging from traditional multi-core CPU processors, supporting a wide class of applications but delivering moderate computing performance, to many-core GPUs, exploiting aggressive data-parallelism and delivering higher performances for streaming computing applications. In this scenario, code portability (and performance portability) become necessary for easy maintainability of applications; this is very relevant in scientific computing where code changes are very frequent, making it tedious and prone to error to keep different code versions aligned. In this work we present the design and optimization of a state-of-the-art production-level LQCD Monte Carlo application, using the directive-based OpenACC programming model. OpenACC abstracts parallel programming to a descriptive level, relieving programmers from specifying how codes should be mapped onto the target architecture. We describe the implementation of a code fully written in OpenACC, and show that we are able to target several different architectures, including state-of-the-art traditional CPUs and GPUs, with the same code. We also measure performance, evaluating the computing efficiency of our OpenACC code on several architectures, comparing with GPU-specific implementations and showing that a good level of performance-portability can be reached.Comment: 26 pages, 2 png figures, preprint of an article submitted for consideration in International Journal of Modern Physics

A new generation 99 line Matlab code for compliance Topology Optimization and its extension to 3D

Compact and efficient Matlab implementations of compliance Topology Optimization (TO) for 2D and 3D continua are given, consisting of 99 and 125 lines respectively. On discretizations ranging from $3\cdot 10^{4}$ to $4.8\cdot10^{5}$ elements, the 2D version, named top99neo, shows speedups from 2.55 to 5.5 times compared to the well-known top88 code (Andreassen-etal 2011). The 3D version, named top3D125, is the most compact and efficient Matlab implementation for 3D TO to date, showing a speedup of 1.9 times compared to the code of Amir-etal 2014, on a discretization with $2.2\cdot10^{5}$ elements. For both codes, improvements are due to much more efficient procedures for the assembly and implementation of filters and shortcuts in the design update step. The use of an acceleration strategy, yielding major cuts in the overall computational time, is also discussed, stressing its easy integration within the basic codes.Comment: 17 pages, 8 Figures, 4 Table