The structure of a logarithmic advice class

The complexity class Full-P / log, corresponding to a form of logarithmic advice for polynomial time, is studied. In order to understand the inner structure of this class, we characterize Full-P /log in terms of Turing reducibility to a special family of sparse sets. Other characterizations of Full-P / log, relating it to sets with small information content, were already known. These used tally sets whose words follow a given regular pattern and tally sets that are regular in a resource-bounded Kolmogorov complexity sense. We obtain here relationships between the equivalence classes of the mentioned tally and sparse sets under various reducibiities, which provide new knowledge about the logarithmic advice class. Another way to measure the amount of information encoded in a language in a nonuniform class, is to study the relative complexity of computing advice functions for this language. We prove bounds on the complexity of ad vice functions for Full-P / log and for other subclasses of it. As a consequence, Full-P / log is located in the Extended Low Hierarchy

Nondeterministic functions and the existence of optimal proof systems

We provide new characterizations of two previously studied questions on nondeterministic function classes: Q1: Do nondeterministic functions admit efficient deterministic refinements? Q2: Do nondeterministic function classes contain complete functions? We show that Q1 for the class is equivalent to the question whether the standard proof system for SAT is p-optimal, and to the assumption that every optimal proof system is p-optimal. Assuming only the existence of a p-optimal proof system for SAT, we show that every set with an optimal proof system has a p-optimal proof system. Under the latter assumption, we also obtain a positive answer to Q2 for the class . An alternative view on nondeterministic functions is provided by disjoint sets and tuples. We pursue this approach for disjoint -pairs and its generalizations to tuples of sets from and with disjointness conditions of varying strength. In this way, we obtain new characterizations of Q2 for the class . Question Q1 for is equivalent to the question of whether every disjoint -pair is easy to separate. In addition, we characterize this problem by the question of whether every propositional proof system has the effective interpolation property. Again, these interpolation properties are intimately connected to disjoint -pairs, and we show how different interpolation properties can be modeled by -pairs associated with the underlying proof system

The Structure of logarithmic advice complexity classes

A nonuniform class called here Full-P/log, due to Ko, is studied. It corresponds to polynomial time with logarithmically long advice. Its importance lies in the structural properties it enjoys, more interesting than those of the alternative class P/log; specifically, its introduction was motivated by the need of a logarithmic advice class closed under polynomial-time deterministic reductions. Several characterizations of Full-P/log are shown, formulated in terms of various sorts of tally sets with very small information content. A study of its inner structure is presented, by considering the most usual reducibilities and looking for the relationships among the corresponding reduction and equivalence classes defined from these special tally sets.Postprint (published version

Finding weakly reversible realizations of chemical reaction networks using optimization

An algorithm is given in this paper for the computation of dynamically equivalent weakly reversible realizations with the maximal number of reactions, for chemical reaction networks (CRNs) with mass action kinetics. The original problem statement can be traced back at least 30 years ago. The algorithm uses standard linear and mixed integer linear programming, and it is based on elementary graph theory and important former results on the dense realizations of CRNs. The proposed method is also capable of determining if no dynamically equivalent weakly reversible structure exists for a given reaction network with a previously fixed complex set.Comment: 18 pages, 9 figure

Diagonal and Low-Rank Matrix Decompositions, Correlation Matrices, and Ellipsoid Fitting

In this paper we establish links between, and new results for, three problems that are not usually considered together. The first is a matrix decomposition problem that arises in areas such as statistical modeling and signal processing: given a matrix $X$ formed as the sum of an unknown diagonal matrix and an unknown low rank positive semidefinite matrix, decompose $X$ into these constituents. The second problem we consider is to determine the facial structure of the set of correlation matrices, a convex set also known as the elliptope. This convex body, and particularly its facial structure, plays a role in applications from combinatorial optimization to mathematical finance. The third problem is a basic geometric question: given points $v_1,v_2,...,v_n\in \R^k$ (where $n > k$) determine whether there is a centered ellipsoid passing \emph{exactly} through all of the points. We show that in a precise sense these three problems are equivalent. Furthermore we establish a simple sufficient condition on a subspace $U$ that ensures any positive semidefinite matrix $L$ with column space $U$ can be recovered from $D+L$ for any diagonal matrix $D$ using a convex optimization-based heuristic known as minimum trace factor analysis. This result leads to a new understanding of the structure of rank-deficient correlation matrices and a simple condition on a set of points that ensures there is a centered ellipsoid passing through them.Comment: 20 page

New Applications of the Nearest-Neighbor Chain Algorithm

The nearest-neighbor chain algorithm was proposed in the eighties as a way to speed up certain hierarchical clustering algorithms. In the first part of the dissertation, we show that its application is not limited to clustering. We apply it to a variety of geometric and combinatorial problems. In each case, we show that the nearest-neighbor chain algorithm finds the same solution as a preexistent greedy algorithm, but often with an improved runtime. We obtain speedups over greedy algorithms for Euclidean TSP, Steiner TSP in planar graphs, straight skeletons, a geometric coverage problem, and three stable matching models. In the second part, we study the stable-matching Voronoi diagram, a type of plane partition which combines properties of stable matchings and Voronoi diagrams. We propose political redistricting as an application. We also show that it is impossible to compute this diagram in an algebraic model of computation, and give three algorithmic approaches to overcome this obstacle. One of them is based on the nearest-neighbor chain algorithm, linking the two parts together

Conspiracies between learning algorithms, circuit lower bounds, and pseudorandomness

We prove several results giving new and stronger connections between learning theory, circuit complexity and pseudorandomness. Let C be any typical class of Boolean circuits, and C[s(n)] denote n-variable C-circuits of size ≤ s(n). We show: Learning Speedups. If C[poly(n)] admits a randomized weak learning algorithm under the uniform distribution with membership queries that runs in time 2n/nω(1), then for every k ≥ 1 and ε > 0 the class C[n k ] can be learned to high accuracy in time O(2n ε ). There is ε > 0 such that C[2n ε ] can be learned in time 2n/nω(1) if and only if C[poly(n)] can be learned in time 2(log n) O(1) . Equivalences between Learning Models. We use learning speedups to obtain equivalences between various randomized learning and compression models, including sub-exponential time learning with membership queries, sub-exponential time learning with membership and equivalence queries, probabilistic function compression and probabilistic average-case function compression. A Dichotomy between Learnability and Pseudorandomness. In the non-uniform setting, there is non-trivial learning for C[poly(n)] if and only if there are no exponentially secure pseudorandom functions computable in C[poly(n)]. Lower Bounds from Nontrivial Learning. If for each k ≥ 1, (depth-d)-C[n k ] admits a randomized weak learning algorithm with membership queries under the uniform distribution that runs in time 2n/nω(1), then for each k ≥ 1, BPE * (depth-d)-C[n k ]. If for some ε > 0 there are P-natural proofs useful against C[2n ε ], then ZPEXP * C[poly(n)]. Karp-Lipton Theorems for Probabilistic Classes. If there is a k > 0 such that BPE ⊆ i.o.Circuit[n k ], then BPEXP ⊆ i.o.EXP/O(log n). If ZPEXP ⊆ i.o.Circuit[2n/3 ], then ZPEXP ⊆ i.o.ESUBEXP. Hardness Results for MCSP. All functions in non-uniform NC1 reduce to the Minimum Circuit Size Problem via truth-table reductions computable by TC0 circuits. In particular, if MCSP ∈ TC0 then NC1 = TC0