Spectral imaging in preclinical research and clinical pathology.

Spectral imaging methods are attracting increased interest from researchers and practitioners in basic science, pre-clinical and clinical arenas. A combination of better labeling reagents and better optics creates opportunities to detect and measure multiple parameters at the molecular and cellular level. These tools can provide valuable insights into the basic mechanisms of life, and yield diagnostic and prognostic information for clinical applications. There are many multispectral technologies available, each with its own advantages and limitations. This chapter will present an overview of the rationale for spectral imaging, and discuss the hardware, software and sample labeling strategies that can optimize its usefulness in clinical settings

Advanced Brain Tumour Segmentation from MRI Images

Magnetic resonance imaging (MRI) is widely used medical technology for diagnosis of various tissue abnormalities, detection of tumors. The active development in the computerized medical image segmentation has played a vital role in scientific research. This helps the doctors to take necessary treatment in an easy manner with fast decision making. Brain tumor segmentation is a hot point in the research field of Information technology with biomedical engineering. The brain tumor segmentation is motivated by assessing tumor growth, treatment responses, computer-based surgery, treatment of radiation therapy, and developing tumor growth models. Therefore, computer-aided diagnostic system is meaningful in medical treatments to reducing the workload of doctors and giving the accurate results. This chapter explains the causes, awareness of brain tumor segmentation and its classification, MRI scanning process and its operation, brain tumor classifications, and different segmentation methodologies

Iris Recognition Using Scattering Transform and Textural Features

Iris recognition has drawn a lot of attention since the mid-twentieth century. Among all biometric features, iris is known to possess a rich set of features. Different features have been used to perform iris recognition in the past. In this paper, two powerful sets of features are introduced to be used for iris recognition: scattering transform-based features and textural features. PCA is also applied on the extracted features to reduce the dimensionality of the feature vector while preserving most of the information of its initial value. Minimum distance classifier is used to perform template matching for each new test sample. The proposed scheme is tested on a well-known iris database, and showed promising results with the best accuracy rate of 99.2%

Histopathological image analysis : a review

Over the past decade, dramatic increases in computational power and improvement in image analysis algorithms have allowed the development of powerful computer-assisted analytical approaches to radiological data. With the recent advent of whole slide digital scanners, tissue histopathology slides can now be digitized and stored in digital image form. Consequently, digitized tissue histopathology has now become amenable to the application of computerized image analysis and machine learning techniques. Analogous to the role of computer-assisted diagnosis (CAD) algorithms in medical imaging to complement the opinion of a radiologist, CAD algorithms have begun to be developed for disease detection, diagnosis, and prognosis prediction to complement the opinion of the pathologist. In this paper, we review the recent state of the art CAD technology for digitized histopathology. This paper also briefly describes the development and application of novel image analysis technology for a few specific histopathology related problems being pursued in the United States and Europe

Screen Content Image Segmentation Using Sparse-Smooth Decomposition

Sparse decomposition has been extensively used for different applications including signal compression and denoising and document analysis. In this paper, sparse decomposition is used for image segmentation. The proposed algorithm separates the background and foreground using a sparse-smooth decomposition technique such that the smooth and sparse components correspond to the background and foreground respectively. This algorithm is tested on several test images from HEVC test sequences and is shown to have superior performance over other methods, such as the hierarchical k-means clustering in DjVu. This segmentation algorithm can also be used for text extraction, video compression and medical image segmentation.Comment: Asilomar Conference on Signals, Systems and Computers, IEEE, 2015, (to Appear

Improving Tree Crown Mapping using Airborne LiDAR with Genetic Algorithms

Landscape-scale mapping of individual trees derived from LiDAR (Light Detection And Ranging) data have been found to be valuable for a wide range of environmental analyses including carbon inventories; fuel estimations for wildfire risk assessment and management. These mapping efforts use individual tree crown (ITC) recognition algorithms applied to LiDAR point clouds, which have complex parameter sets. Genetic algorithms (GA) have been demonstrated to be excellent function optimizers for very complex search spaces and perform well for parameter tuning. Here, we use GAs to identify the best of a set of published ITC models and their optimal parameters for airborne LiDAR of forested plots in the Sierra Nevada Mountains of California. We assessed the accuracy of these ITC models in terms of the F-score and percentage bias for tree crown prediction. GA-optimization generally improved on ITC default parameters and showed that these models typically perform better for detecting overstory trees

A Genetic Bayesian Approach for Texture-Aided Urban Land-Use/Land-Cover Classification

Urban land-use/land-cover classification is entering a new era with the increased availability of high-resolution satellite imagery and new methods such as texture analysis and artificial intelligence classifiers. Recent research demonstrated exciting improvements of using fractal dimension, lacunarity, and Moran’s I in classification but the integration of these spatial metrics has seldom been investigated. Also, previous research focuses more on developing new classifiers than improving the robust, simple, and fast maximum likelihood classifier. The goal of this dissertation research is to develop a new approach that utilizes a texture vector (fractal dimension, lacunarity, and Moran’s I), combined with a new genetic Bayesian classifier, to improve urban land-use/land-cover classification accuracy. Examples of different land-use/land-covers using post-Katrina IKONOS imagery of New Orleans were demonstrated. Because previous geometric-step and arithmetic-step implementations of the triangular prism algorithm can result in significant unutilized pixels when measuring local fractal dimension, the divisor-step method was developed and found to yield more accurate estimation. In addition, a new lacunarity estimator based on the triangular prism method and the gliding-box algorithm was developed and found better than existing gray-scale estimators for classifying land-use/land-cover from IKONOS imagery. The accuracy of fractal dimension-aided classification was less sensitive to window size than lacunarity and Moran’s I. In general, the optimal window size for the texture vector-aided approach is 27x27 to 37x37 pixels (i.e., 108x108 to 148x148 meters). As expected, a texture vector-aided approach yielded 2-16% better accuracy than individual textural index-aided approach. Compared to the per-pixel maximum likelihood classification, the proposed genetic Bayesian classifier yielded 12% accuracy improvement by optimizing prior probabilities with the genetic algorithm; whereas the integrated approach with a texture vector and the genetic Bayesian classifier significantly improved classification accuracy by 17-21%. Compared to the neural network classifier and genetic algorithm-support vector machines, the genetic Bayesian classifier was slightly less accurate but more computationally efficient and required less human supervision. This research not only develops a new approach of integrating texture analysis with artificial intelligence for classification, but also reveals a promising avenue of using advanced texture analysis and classification methods to associate socioeconomic statuses with remote sensing image textures

Optimum Feature Selection for Recognizing Objects from Satellite Imagery Using Genetic Algorithm

Object recognition is a research area that aims to associate objects to categories or classes. Usually recognition of object specific geospatial features, as building, tree, mountains, roads, and rivers from high-resolution satellite imagery is a time consuming and expensive problem in the maintenance cycle of a Geographic Information System (GIS). Feature selection is the task of selecting a small subset from original features that can achieve maximum classification accuracy and reduce data dimensionality. This subset of features has some very important benefits like, it reduces computational complexity of learning algorithms, saves time, improve accuracy and the selected features can be insightful for the people involved in problem domain. This makes feature selection as an indispensable task in classification task. In our work, we propose wrapper approach based on Genetic Algorithm (GA) as an optimization algorithm to search the space of all possible subsets related to object geospatial features set for the purpose of recognition. GA is wrapped with three different classifier algorithms namely neural network, k-nearest neighbor and decision tree J48 as subset evaluating mechanism. The GA-ANN, GA-KNN and GA-J48 methods are implemented using the WEKA software on dataset that contains 38 extracted features from satellite images using ENVI software. The proposed wrapper approach incorporated the Correlation Ranking Filter (CRF) for spatial features to remove unimportant features. Results suggest that GA based neural classifiers and using CRF for spatial features are robust and effective in finding optimal subsets of features from large data sets