Diagrams as Vehicles for Scientific Reasoning

We argue that diagrams are not just a communicative tool but play important roles in the reasoning of biologists: in characterizing the phenomenon to be explained, identifying explanatory relations, and developing an account of the responsible mechanism. In the first two tasks diagrams facilitate applying visual processing to the detection of patterns that constitute phenomena or explanatory relations. Diagrams of a mechanism serve to guide reasoning about what parts and operations are needed and how potential parts of the mechanism are related to each other. Further they guide the development of computational models used to determine how the mechanism will behave. We illustrate each of these uses of diagrams with examples from research on circadian rhythm

An infra-red finger tracking system used in the assessment and remediation of “graph-as-picture” misconceptions

The workshop presentation will describe a specialized ap- plication of Lee’s “Wiimote Whiteboard” [7] an infra-red camera based tracking system which uses the Nintendo Wii wireless remote control unit and Bluetooth. Young students wear a very small infra-red LED on their index finger with a forefinger/thumb operated micro-switch for produ- cing “mouse clicks”. This system is combined with a vertically mounted data projector or a horizontally mounted regular computer LCD display, creating a cost-effective large interactive touch surface. The system has a fast response time and has been used with primary school students in diagrammatic knowledge (graphicacy) assessment [4] and in interactive dynalinked diagrammatic applications [5]. These applications were de- signed to investigate the “graph-as-picture” misconception and they will be described and demonstrated at the workshop

Fast filtering and animation of large dynamic networks

Detecting and visualizing what are the most relevant changes in an evolving network is an open challenge in several domains. We present a fast algorithm that filters subsets of the strongest nodes and edges representing an evolving weighted graph and visualize it by either creating a movie, or by streaming it to an interactive network visualization tool. The algorithm is an approximation of exponential sliding time-window that scales linearly with the number of interactions. We compare the algorithm against rectangular and exponential sliding time-window methods. Our network filtering algorithm: i) captures persistent trends in the structure of dynamic weighted networks, ii) smoothens transitions between the snapshots of dynamic network, and iii) uses limited memory and processor time. The algorithm is publicly available as open-source software.Comment: 6 figures, 2 table

Color-to-speech sensory substitution device for the visually impaired

A hardware device is presented that converts color to speech for use by the blind and visually impaired. The use of audio tones for transferring knowledge of colors identified to individuals was investigated but was discarded in favor of the use of direct speech. A unique color-clustering algorithm was implemented using a hardware description language (VHDL), which in-turn was used to program an Altera Corporation's programmable logic device (PLD). The PLD maps all possible incoming colors into one of 24 color names, and outputs an address to a speech device, which in-turn plays back one of 24 voice recorded color names. To the author's knowledge, there are only two such color to speech systems available on the market. However, both are designed to operate at a distance of less than an inch from the surface whose color is to be checked. The device presented here uses original front-end optics to increase the range of operation from less than an inch to sixteen feet and greater. Because of the increased range of operation, the device can not only be used for color identification, but also as a navigation aid

An Animation Framework for Improving the Comprehension of TinyOS Programs

To meet the increasing demand for monitoring of the physical world, there has been an increase in the development of wireless sensor network applications. The TinyOS platform has emerged as a de facto standard for developing these applications. The platform offers a number of advantages, with its support for concurrency, power-efficient operation, and resource-constrained hardware chief among them. However, the benefits come at a price. Even without the TinyOS platform, the inherent parallel and distributed nature of these applications makes it difficult for developers to reason about program behavior. Further, the TinyOS programming model adopts asynchronous, split-phase execution semantics. Developers must explicitly manage program control state across event-handlers, components, and devices. This makes the design, debugging, and comprehension of these programs even more difficult. In this work, we describe an animation framework for TinyOS programs, designed to enhance the comprehension of their runtime behavior. The framework enables application developers to specify, in the form of an XML configuration file, the runtime elements to be captured within a given system and the manner in which those elements should be displayed. The resulting visualization presents an animated play-back sequence of the events that occurred during execution. The framework also provides a visual representation that connects causally-related events in a distributed network. We describe the design and implementation of the animation framework and present an analysis of the runtime overhead it introduces

Proof of Concept For the Use of Motion Capture Technology In Athletic Pedagogy

Visualization has long been an important method for conveying complex information. Where information transfer using written and spoken means might amount to 200-250 words per minute, visual media can often convey information at many times this rate. This makes visualization a potentially important tool for education. Athletic instruction, particularly, can involve communication about complex human movement that is not easily conveyed with written or spoken descriptions. Video based instruction can be problematic since video data can contain too much information, thereby making it more difficult for a student to absorb what is cognitively necessary. The lesson is to present the learner what is needed and not more. We present a novel use of motion capture animation as an educational tool for teaching athletic movements. The advantage of motion capture is its ability to accurately represent real human motion in a minimalist context which removes extraneous information normally found in video. Motion capture animation only displays motion information, not additional information regarding the motion context. Producing an “automated coach” would be too large and difficult a problem to solve within the scope of a Master's thesis but we can perform initial steps including producing a useful software tool which performs data analysis on two motion datasets. We believe such a tool would be beneficial to a human coach as an analysis tool and the work would provide some useful understanding of next important steps towards perhaps someday producing an automated coach

Time indeterminacy and spatio-temporal building transformations: an approach for architectural heritage understanding

Nowadays most digital reconstructions in architecture and archeology describe buildings heritage as awhole of static and unchangeable entities. However, historical sites can have a rich and complex history, sometimes full of evolutions, sometimes only partially known by means of documentary sources. Various aspects condition the analysis and the interpretation of cultural heritage. First of all, buildings are not inexorably constant in time: creation, destruction, union, division, annexation, partial demolition and change of function are the transformations that buildings can undergo over time. Moreover, other factors sometimes contradictory can condition the knowledge about an historical site, such as historical sources and uncertainty. On one hand, historical documentation concerning past states can be heterogeneous, dubious, incomplete and even contradictory. On the other hand, uncertainty is prevalent in cultural heritage in various forms: sometimes it is impossible to define the dating period, sometimes the building original shape or yet its spatial position. This paper proposes amodeling approach of the geometrical representation of buildings, taking into account the kind of transformations and the notion of temporal indetermination

Geoscience after IT: Part L. Adjusting the emerging information system to new technology

Coherent development depends on following widely used standards that respect our vast legacy of existing entries in the geoscience record. Middleware ensures that we see a coherent view from our desktops of diverse sources of information. Developments specific to managing the written word, map content, and structured data come together in shared metadata linking topics and information types