Data Ontology and an Information System Realization for Web-Based Management of Image Measurements

Image acquisition, processing, and quantification of objects (morphometry) require the integration of data inputs and outputs originating from heterogeneous sources. Management of the data exchange along this workflow in a systematic manner poses several challenges, notably the description of the heterogeneous meta-data and the interoperability between the software used. The use of integrated software solutions for morphometry and management of imaging data in combination with ontologies can reduce meta-data loss and greatly facilitate subsequent data analysis. This paper presents an integrated information system, called LabIS. The system has the objectives to automate (i) the process of storage, annotation, and querying of image measurements and (ii) to provide means for data sharing with third party applications consuming measurement data using open standard communication protocols. LabIS implements 3-tier architecture with a relational database back-end and an application logic middle tier realizing web-based user interface for reporting and annotation and a web-service communication layer. The image processing and morphometry functionality is backed by interoperability with ImageJ, a public domain image processing software, via integrated clients. Instrumental for the latter feat was the construction of a data ontology representing the common measurement data model. LabIS supports user profiling and can store arbitrary types of measurements, regions of interest, calibrations, and ImageJ settings. Interpretation of the stored measurements is facilitated by atlas mapping and ontology-based markup. The system can be used as an experimental workflow management tool allowing for description and reporting of the performed experiments. LabIS can be also used as a measurements repository that can be transparently accessed by computational environments, such as Matlab. Finally, the system can be used as a data sharing tool

Services on Application Level in Grid for Scientific Calculations

AMS Subj. Classification: 00-02, (General)The Grid is a hardware and software infrastructure that coordinates access to distribute computational and data resources, shared by different institutes, computational centres and organizations. The Open Grid Services Architecture (OGSA) describes an architecture for a service-oriented grid computing environment, based on Web service technologies, WSDL and SOAP. In this article we investigate possibilities for realization of business process composition in grid environment, based on OGSA standard

Leveraging TEWI platform to enhance scientific collaboration on universities

This paper presents core functionalities of TEWI platform which will be leveraged in terms of supporting scientific cooperation for students and university employees when working on scientific projects, publications, doctoral processes or grants. This document provides also basic information on PLM plat-form and how it fits into scientific activities

Merging Grid Technologies

This paper reports the integration of the astronomical Grid solution realised in the Astro-WISE information system with the EGEE Grid and the porting of Astro-WISE applications on EGEE. We review the architecture of the Astro-WISE Grid, define the problems for the integration of the Grid infrastructures and our solution to these problems. We give examples of applications running on Astro-WISE and EGEE and review future development of the merged system

Spartan Daily April 6, 2010

Volume 134, Issue 32https://scholarworks.sjsu.edu/spartandaily/1247/thumbnail.jp

Status of the CBM experiment

Abstract. The Compressed Baryonic Matter (CBM) experiment at the Facility for Anti-Proton and Ion Research (FAIR) will explore the phase diagram of strongly interacting matter at highest net baryon densities and moderate temperatures. The CBM physics pro-gram will be started with beams delivered by the SIS 100 synchrotron, providing energies from 2 to 11 GeV/nucleon for heavy nuclei, up to 14 GeV/nucleon for light nuclei, and 29 GeV for protons. The highest net baryon densities will be explored with ion beams up to 45 GeV/nucleon energy delivered by SIS 300 in the next stage of FAIR. Collision rates up to 107 per second are required to produce very rare probes with unprecedented statistics in this energy range. Their signatures are complex. These conditions call for detector systems designed to meet the extreme requirements in terms of rate capability, momentum and spatial resolution, and a novel DAQ and trigger concept which is not limited by latency but by throughput. The article discusses the development status of the CBM sub-systems for charged particle tracking, vertex detection, electron/muon identifi-cation, hadron/time-of-flight measurement, electromagnetic and zero-degree calorimetry, in terms of prototypes and expected physics performance. The concept and develop-ment status of CBM’s central detector, the Silicon Tracking System STS are presented in somewhat more detail.

Position paper: Runtime Model for Role-based Software Systems

In the increasingly dynamic realities of today's software systems, it is no longer feasible to always expect human developers to react to changing environments and changing conditions immediately. Instead, software systems need to be self-aware and autonomously adapt their behavior according to their experiences gathered from their environment. Current research provides role-based modeling as a promising approach to handle the adaptivity and self-awareness within a software system. There are established role-based systems e.g., for application development, persistence, and so on. However, these are isolated approaches using the role-based model on their specific layer and mapping to existing non-role-based layers. We present a global runtime model covering the whole stack of a software system to maintain a global view of the current system state and model the interdependencies between the layers. This facilitates building holistic role-based software systems using the role concept on every single layer to exploit its full potential, particularly adaptivity and self-awareness