6,300 research outputs found
Temporal Networks
A great variety of systems in nature, society and technology -- from the web
of sexual contacts to the Internet, from the nervous system to power grids --
can be modeled as graphs of vertices coupled by edges. The network structure,
describing how the graph is wired, helps us understand, predict and optimize
the behavior of dynamical systems. In many cases, however, the edges are not
continuously active. As an example, in networks of communication via email,
text messages, or phone calls, edges represent sequences of instantaneous or
practically instantaneous contacts. In some cases, edges are active for
non-negligible periods of time: e.g., the proximity patterns of inpatients at
hospitals can be represented by a graph where an edge between two individuals
is on throughout the time they are at the same ward. Like network topology, the
temporal structure of edge activations can affect dynamics of systems
interacting through the network, from disease contagion on the network of
patients to information diffusion over an e-mail network. In this review, we
present the emergent field of temporal networks, and discuss methods for
analyzing topological and temporal structure and models for elucidating their
relation to the behavior of dynamical systems. In the light of traditional
network theory, one can see this framework as moving the information of when
things happen from the dynamical system on the network, to the network itself.
Since fundamental properties, such as the transitivity of edges, do not
necessarily hold in temporal networks, many of these methods need to be quite
different from those for static networks
Petri nets for systems and synthetic biology
We give a description of a Petri net-based framework for
modelling and analysing biochemical pathways, which uni¯es the qualita-
tive, stochastic and continuous paradigms. Each perspective adds its con-
tribution to the understanding of the system, thus the three approaches
do not compete, but complement each other. We illustrate our approach
by applying it to an extended model of the three stage cascade, which
forms the core of the ERK signal transduction pathway. Consequently
our focus is on transient behaviour analysis. We demonstrate how quali-
tative descriptions are abstractions over stochastic or continuous descrip-
tions, and show that the stochastic and continuous models approximate
each other. Although our framework is based on Petri nets, it can be
applied more widely to other formalisms which are used to model and
analyse biochemical networks
A Survey on Continuous Time Computations
We provide an overview of theories of continuous time computation. These
theories allow us to understand both the hardness of questions related to
continuous time dynamical systems and the computational power of continuous
time analog models. We survey the existing models, summarizing results, and
point to relevant references in the literature
Probabilistic Reachability Analysis for Large Scale Stochastic Hybrid Systems
This paper studies probabilistic reachability analysis for large scale stochastic hybrid systems (SHS) as a problem of rare event estimation. In literature, advanced rare event estimation theory has recently been embedded within a stochastic analysis framework, and this has led to significant novel results in rare event estimation for a diffusion process using sequential MC simulation. This paper presents this rare event estimation theory directly in terms of probabilistic reachability analysis of an SHS, and develops novel theory which allows to extend the novel results for application to a large scale SHS where a very huge number of rare discrete modes may contribute significantly to the reach probability. Essentially, the approach taken is to introduce an aggregation of the discrete modes, and to develop importance sampling relative to the rare switching between the aggregation modes. The practical working of this approach is demonstrated for the safety verification of an advanced air traffic control example
Verifying service continuity in a satellite reconfiguration procedure: application to a satellite
The paper discusses the use of the TURTLE UML profile to model and verify service continuity during dynamic reconfiguration of embedded software, and space-based telecommunication software in particular. TURTLE extends UML class diagrams with composition operators, and activity diagrams with temporal operators. Translating TURTLE to the formal description technique RT-LOTOS gives the profile a formal semantics and makes it possible to reuse verification techniques implemented by the RTL, the RT-LOTOS toolkit developed at LAAS-CNRS. The paper proposes a modeling and formal validation methodology based on TURTLE and RTL, and discusses its application to a payload software application in charge of an embedded packet switch. The paper demonstrates the benefits of using TURTLE to prove service continuity for dynamic reconfiguration of embedded software
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