Genetic algorithms with memory- and elitism-based immigrants in dynamic environments

Copyright @ 2008 by the Massachusetts Institute of TechnologyIn recent years the genetic algorithm community has shown a growing interest in studying dynamic optimization problems. Several approaches have been devised. The random immigrants and memory schemes are two major ones. The random immigrants scheme addresses dynamic environments by maintaining the population diversity while the memory scheme aims to adapt genetic algorithms quickly to new environments by reusing historical information. This paper investigates a hybrid memory and random immigrants scheme, called memory-based immigrants, and a hybrid elitism and random immigrants scheme, called elitism-based immigrants, for genetic algorithms in dynamic environments. In these schemes, the best individual from memory or the elite from the previous generation is retrieved as the base to create immigrants into the population by mutation. This way, not only can diversity be maintained but it is done more efficiently to adapt genetic algorithms to the current environment. Based on a series of systematically constructed dynamic problems, experiments are carried out to compare genetic algorithms with the memory-based and elitism-based immigrants schemes against genetic algorithms with traditional memory and random immigrants schemes and a hybrid memory and multi-population scheme. The sensitivity analysis regarding some key parameters is also carried out. Experimental results show that the memory-based and elitism-based immigrants schemes efficiently improve the performance of genetic algorithms in dynamic environments.This work was supported by the Engineering and Physical Sciences Research Council (EPSRC) of the United Kingdom under Grant EP/E060722/01

Privacy-Preserving Genetic Relatedness Test

An increasing number of individuals are turning to Direct-To-Consumer (DTC) genetic testing to learn about their predisposition to diseases, traits, and/or ancestry. DTC companies like 23andme and Ancestry.com have started to offer popular and affordable ancestry and genealogy tests, with services allowing users to find unknown relatives and long-distant cousins. Naturally, access and possible dissemination of genetic data prompts serious privacy concerns, thus motivating the need to design efficient primitives supporting private genetic tests. In this paper, we present an effective protocol for privacy-preserving genetic relatedness test (PPGRT), enabling a cloud server to run relatedness tests on input an encrypted genetic database and a test facility's encrypted genetic sample. We reduce the test to a data matching problem and perform it, privately, using searchable encryption. Finally, a performance evaluation of hamming distance based PP-GRT attests to the practicality of our proposals.Comment: A preliminary version of this paper appears in the Proceedings of the 3rd International Workshop on Genome Privacy and Security (GenoPri'16

EVOLUTIONARY ALGORITHMS FOR OVERLAPPING CORRELATION CLUSTERING

Abstract. In Overlapping Correlation Clustering (OCC), a number of objects are assigned to clusters. Two objects in the same cluster have correlated characteristics. As opposed to traditional clustering where objects are assigned to a single cluster, in OCC objects may be assigned to one or more clusters. since an object can have characteristics that are correlated with objects in more than one cluster. In this paper, we present Biased Random-Key Genetic Algorithms for OCC. Computational experiments are presented. 1

EvoSim: Genetic Evolution Simulation

Life is fascinating. Evolution, a fundamental concept behind life, is key to understanding how life as we know it originated on our planet. Computer simulations can be used to model the key aspects of evolution and to create artificial life for robotic agents in a simulated software environment. Through these simulations, we can better understand how random life is, perceive the key relations between the state of the environment and evolution, and find out the necessary factors for life to originate. Our main goal with this project is to create a simulation platform for evolution, combining the core principles of robotics with cutting-edge genetic algorithms

Resource allocation and scheduling of multiple composite web services in cloud computing using cooperative coevolution genetic algorithm

In cloud computing, resource allocation and scheduling of multiple composite web services is an important and challenging problem. This is especially so in a hybrid cloud where there may be some low-cost resources available from private clouds and some high-cost resources from public clouds. Meeting this challenge involves two classical computational problems: one is assigning resources to each of the tasks in the composite web services; the other is scheduling the allocated resources when each resource may be used by multiple tasks at different points of time. In addition, Quality-of-Service (QoS) issues, such as execution time and running costs, must be considered in the resource allocation and scheduling problem. Here we present a Cooperative Coevolutionary Genetic Algorithm (CCGA) to solve the deadline-constrained resource allocation and scheduling problem for multiple composite web services. Experimental results show that our CCGA is both efficient and scalable

Genetic algorithms with immigrants and memory schemes for dynamic shortest path routing problems in mobile ad hoc networks

This article is posted here with permission of IEEE - Copyright @ 2010 IEEEIn recent years, the static shortest path (SP) problem has been well addressed using intelligent optimization techniques, e.g., artificial neural networks, genetic algorithms (GAs), particle swarm optimization, etc. However, with the advancement in wireless communications, more and more mobile wireless networks appear, e.g., mobile networks [mobile ad hoc networks (MANETs)], wireless sensor networks, etc. One of the most important characteristics in mobile wireless networks is the topology dynamics, i.e., the network topology changes over time due to energy conservation or node mobility. Therefore, the SP routing problem in MANETs turns out to be a dynamic optimization problem. In this paper, we propose to use GAs with immigrants and memory schemes to solve the dynamic SP routing problem in MANETs. We consider MANETs as target systems because they represent new-generation wireless networks. The experimental results show that these immigrants and memory-based GAs can quickly adapt to environmental changes (i.e., the network topology changes) and produce high-quality solutions after each change.This work was supported by the Engineering and Physical Sciences Research Council of U.K. underGrant EP/E060722/

Feature selection using genetic algorithms and probabilistic neural networks

Selection of input variables is a key stage in building predictive models, and an important form of data mining. As exhaustive evaluation of potential input sets using full non-linear models is impractical, it is necessary to use simple fast-evaluating models and heuristic selection strategies. This paper discusses a fast, efficient, and powerful nonlinear input selection procedure using a combination of Probabilistic Neural Networks and repeated bitwise gradient descent. The algorithm is compared with forward elimination, backward elimination and genetic algorithms using a selection of real-world data sets. The algorithm has comparative performance and greatly reduced execution time with respect to these alternative approaches. It is demonstrated empirically that reliable results cannot be gained using any of these approaches without the use of resampling