The study of probability model for compound similarity searching

Information Retrieval or IR system main task is to retrieve relevant documents according to the users query. One of IR most popular retrieval model is the Vector Space Model. This model assumes relevance based on similarity, which is defined as the distance between query and document in the concept space. All currently existing chemical compound database systems have adapt the vector space model to calculate the similarity of a database entry to a query compound. However, it assumes that fragments represented by the bits are independent of one another, which is not necessarily true. Hence, the possibility of applying another IR model is explored, which is the Probabilistic Model, for chemical compound searching. This model estimates the probabilities of a chemical structure to have the same bioactivity as a target compound. It is envisioned that by ranking chemical structures in decreasing order of their probability of relevance to the query structure, the effectiveness of a molecular similarity searching system can be increased. Both fragment dependencies and independencies assumption are taken into consideration in achieving improvement towards compound similarity searching system. After conducting a series of simulated similarity searching, it is concluded that PM approaches really did perform better than the existing similarity searching. It gave better result in all evaluation criteria to confirm this statement. In terms of which probability model performs better, the BD model shown improvement over the BIR model

Ranking Archived Documents for Structured Queries on Semantic Layers

Archived collections of documents (like newspaper and web archives) serve as important information sources in a variety of disciplines, including Digital Humanities, Historical Science, and Journalism. However, the absence of efficient and meaningful exploration methods still remains a major hurdle in the way of turning them into usable sources of information. A semantic layer is an RDF graph that describes metadata and semantic information about a collection of archived documents, which in turn can be queried through a semantic query language (SPARQL). This allows running advanced queries by combining metadata of the documents (like publication date) and content-based semantic information (like entities mentioned in the documents). However, the results returned by such structured queries can be numerous and moreover they all equally match the query. In this paper, we deal with this problem and formalize the task of "ranking archived documents for structured queries on semantic layers". Then, we propose two ranking models for the problem at hand which jointly consider: i) the relativeness of documents to entities, ii) the timeliness of documents, and iii) the temporal relations among the entities. The experimental results on a new evaluation dataset show the effectiveness of the proposed models and allow us to understand their limitation

An adaptive approach for image organisation and retrieval

We propose and evaluate an adaptive approach towards content-based image retrieval (CBIR), which is based on the Ostensive Model of developing information needs. We use ostensive relevance to capture the user's current interest and tailor the retrieval accordingly. Our approach supports content-assisted browsing, by incorporating an adaptive query learning scheme based on implicit feedback from the user. Textual and colour features are employed to characterise images. Evidence from these features are combined using the Dempster-Shafer theory of evidence combination. Results from a user-centred, task-oriented evaluation show that the ostensive interface is preferred over a traditional interface with manual query facilities. Its strengths are considered to lie in its ability to adapt to the user's need, and its very intuitive and fluid way of operation