Exploiting general-purpose background knowledge for automated schema matching

The schema matching task is an integral part of the data integration process. It is usually the first step in integrating data. Schema matching is typically very complex and time-consuming. It is, therefore, to the largest part, carried out by humans. One reason for the low amount of automation is the fact that schemas are often defined with deep background knowledge that is not itself present within the schemas. Overcoming the problem of missing background knowledge is a core challenge in automating the data integration process. In this dissertation, the task of matching semantic models, so-called ontologies, with the help of external background knowledge is investigated in-depth in Part I. Throughout this thesis, the focus lies on large, general-purpose resources since domain-specific resources are rarely available for most domains. Besides new knowledge resources, this thesis also explores new strategies to exploit such resources. A technical base for the development and comparison of matching systems is presented in Part II. The framework introduced here allows for simple and modularized matcher development (with background knowledge sources) and for extensive evaluations of matching systems. One of the largest structured sources for general-purpose background knowledge are knowledge graphs which have grown significantly in size in recent years. However, exploiting such graphs is not trivial. In Part III, knowledge graph em- beddings are explored, analyzed, and compared. Multiple improvements to existing approaches are presented. In Part IV, numerous concrete matching systems which exploit general-purpose background knowledge are presented. Furthermore, exploitation strategies and resources are analyzed and compared. This dissertation closes with a perspective on real-world applications

ALOD2Vec Matcher results for OAEI 2020

This paper presents the results of the ALOD2Vec Matcher in the Ontology Alignment Evaluation Initiative(OAEI) 2020. The matching system exploits a Web-scale dataset, i.e.WebIsALOD, as background knowledge source. In order to make use of the dataset, the RDF2Vec approach is applied to derive embeddings for each concept available in the dataset. ALOD2Vec Matcher participated in the OAEI 2018 campaign before. This is the system’s second participation. The matching system has been extended, improved, and achieves better results this year

ALOD2vec matcher results for OAEI 2021

This paper presents the results of the ALOD2vec Matcher in the Ontology Alignment Evaluation Initiative (OAEI) 2021. The matching system exploits a Web-scale dataset, i.e. WebIsALOD, as background knowledge source. In order to make use of the dataset, the RDF2vec approach is applied to derive embeddings for each concept available in the dataset. ALOD2vec Matcher participated in the OAEI 2018 and 2020 campaigns before. This is the system’s third participation

Named Entity Resolution in Personal Knowledge Graphs

Entity Resolution (ER) is the problem of determining when two entities refer to the same underlying entity. The problem has been studied for over 50 years, and most recently, has taken on new importance in an era of large, heterogeneous 'knowledge graphs' published on the Web and used widely in domains as wide ranging as social media, e-commerce and search. This chapter will discuss the specific problem of named ER in the context of personal knowledge graphs (PKGs). We begin with a formal definition of the problem, and the components necessary for doing high-quality and efficient ER. We also discuss some challenges that are expected to arise for Web-scale data. Next, we provide a brief literature review, with a special focus on how existing techniques can potentially apply to PKGs. We conclude the chapter by covering some applications, as well as promising directions for future research.Comment: To appear as a book chapter by the same name in an upcoming (Oct. 2023) book `Personal Knowledge Graphs (PKGs): Methodology, tools and applications' edited by Tiwari et a

Scalable Data Integration for Linked Data

Linked Data describes an extensive set of structured but heterogeneous datasources where entities are connected by formal semantic descriptions. In thevision of the Semantic Web, these semantic links are extended towards theWorld Wide Web to provide as much machine-readable data as possible forsearch queries. The resulting connections allow an automatic evaluation to findnew insights into the data. Identifying these semantic connections betweentwo data sources with automatic approaches is called link discovery. We derivecommon requirements and a generic link discovery workflow based on similaritiesbetween entity properties and associated properties of ontology concepts. Mostof the existing link discovery approaches disregard the fact that in times ofBig Data, an increasing volume of data sources poses new demands on linkdiscovery. In particular, the problem of complex and time-consuming linkdetermination escalates with an increasing number of intersecting data sources.To overcome the restriction of pairwise linking of entities, holistic clusteringapproaches are needed to link equivalent entities of multiple data sources toconstruct integrated knowledge bases. In this context, the focus on efficiencyand scalability is essential. For example, reusing existing links or backgroundinformation can help to avoid redundant calculations. However, when dealingwith multiple data sources, additional data quality problems must also be dealtwith. This dissertation addresses these comprehensive challenges by designingholistic linking and clustering approaches that enable reuse of existing links.Unlike previous systems, we execute the complete data integration workflowvia a distributed processing system. At first, the LinkLion portal will beintroduced to provide existing links for new applications. These links act asa basis for a physical data integration process to create a unified representationfor equivalent entities from many data sources. We then propose a holisticclustering approach to form consolidated clusters for same real-world entitiesfrom many different sources. At the same time, we exploit the semantic typeof entities to improve the quality of the result. The process identifies errorsin existing links and can find numerous additional links. Additionally, theentity clustering has to react to the high dynamics of the data. In particular,this requires scalable approaches for continuously growing data sources withmany entities as well as additional new sources. Previous entity clusteringapproaches are mostly static, focusing on the one-time linking and clustering ofentities from few sources. Therefore, we propose and evaluate new approaches for incremental entity clustering that supports the continuous addition of newentities and data sources. To cope with the ever-increasing number of LinkedData sources, efficient and scalable methods based on distributed processingsystems are required. Thus we propose distributed holistic approaches to linkmany data sources based on a clustering of entities that represent the samereal-world object. The implementation is realized on Apache Flink. In contrastto previous approaches, we utilize efficiency-enhancing optimizations for bothdistributed static and dynamic clustering. An extensive comparative evaluationof the proposed approaches with various distributed clustering strategies showshigh effectiveness for datasets from multiple domains as well as scalability on amulti-machine Apache Flink cluster

Interactive ontology matching: using expert feedback to select attribute mappings

International audienceInteractive Ontology Matching considers the participation of domain experts during the matching process of two ontologies. An important step of this process is the selection of mappings to submit to the expert. These mappings can be between concepts, attributes or relationships of the ontologies. Existing approaches define the set of mapping suggestions only in the beginning of the process before expert involvement. In previous work, we proposed an approach to refine the set of mapping suggestions after each expert feedback, benefiting from the expert feedback to form a set of mapping suggestions of better quality. In this approach, only concept mappings were considered during the refinement. In this paper, we show a new approach to evaluate the benefit of also considering attribute mappings during the interactive phase of the process. The approach was evaluated using the OAEI conference data set, which showed an increase in recall without sacrificing precision. The approach was compared with the state-of-the-art, showing that the approach has generated alignment with state-of-the-art quality

Name Variants for Improving Entity Discovery and Linking

Identifying all names that refer to a particular set of named entities is a challenging task, as quite often we need to consider many features that include a lot of variation like abbreviations, aliases, hypocorism, multilingualism or partial matches. Each entity type can also have specific rules for name variances: people names can include titles, country and branch names are sometimes removed from organization names, while locations are often plagued by the issue of nested entities. The lack of a clear strategy for collecting, processing and computing name variants significantly lowers the recall of tasks such as Named Entity Linking and Knowledge Base Population since name variances are frequently used in all kind of textual content. This paper proposes several strategies to address these issues. Recall can be improved by combining knowledge repositories and by computing additional variances based on algorithmic approaches. Heuristics and machine learning methods then analyze the generated name variances and mark ambiguous names to increase precision. An extensive evaluation demonstrates the effects of integrating these methods into a new Named Entity Linking framework and confirms that systematically considering name variances yields significant performance improvements

Local matching learning of large scale biomedical ontologies

Les larges ontologies biomédicales décrivent généralement le même domaine d'intérêt, mais en utilisant des modèles de modélisation et des vocabulaires différents. Aligner ces ontologies qui sont complexes et hétérogènes est une tâche fastidieuse. Les systèmes de matching doivent fournir des résultats de haute qualité en tenant compte de la grande taille de ces ressources. Les systèmes de matching d'ontologies doivent résoudre deux problèmes: (i) intégrer la grande taille d'ontologies, (ii) automatiser le processus d'alignement. Le matching d'ontologies est une tâche difficile en raison de la large taille des ontologies. Les systèmes de matching d'ontologies combinent différents types de matcher pour résoudre ces problèmes. Les principaux problèmes de l'alignement de larges ontologies biomédicales sont: l'hétérogénéité conceptuelle, l'espace de recherche élevé et la qualité réduite des alignements résultants. Les systèmes d'alignement d'ontologies combinent différents matchers afin de réduire l'hétérogénéité. Cette combinaison devrait définir le choix des matchers à combiner et le poids. Différents matchers traitent différents types d'hétérogénéité. Par conséquent, le paramétrage d'un matcher devrait être automatisé par les systèmes d'alignement d'ontologies afin d'obtenir une bonne qualité de correspondance. Nous avons proposé une approche appele "local matching learning" pour faire face à la fois à la grande taille des ontologies et au problème de l'automatisation. Nous divisons un gros problème d'alignement en un ensemble de problèmes d'alignement locaux plus petits. Chaque problème d'alignement local est indépendamment aligné par une approche d'apprentissage automatique. Nous réduisons l'énorme espace de recherche en un ensemble de taches de recherche de corresondances locales plus petites. Nous pouvons aligner efficacement chaque tache de recherche de corresondances locale pour obtenir une meilleure qualité de correspondance. Notre approche de partitionnement se base sur une nouvelle stratégie à découpes multiples générant des partitions non volumineuses et non isolées. Par conséquence, nous pouvons surmonter le problème de l'hétérogénéité conceptuelle. Le nouvel algorithme de partitionnement est basé sur le clustering hiérarchique par agglomération (CHA). Cette approche génère un ensemble de tâches de correspondance locale avec un taux de couverture suffisant avec aucune partition isolée. Chaque tâche d'alignement local est automatiquement alignée en se basant sur les techniques d'apprentissage automatique. Un classificateur local aligne une seule tâche d'alignement local. Les classificateurs locaux sont basés sur des features élémentaires et structurelles. L'attribut class de chaque set de donne d'apprentissage " training set" est automatiquement étiqueté à l'aide d'une base de connaissances externe. Nous avons appliqué une technique de sélection de features pour chaque classificateur local afin de sélectionner les matchers appropriés pour chaque tâche d'alignement local. Cette approche réduit la complexité d'alignement et augmente la précision globale par rapport aux méthodes d'apprentissage traditionnelles. Nous avons prouvé que l'approche de partitionnement est meilleure que les approches actuelles en terme de précision, de taux de couverture et d'absence de partitions isolées. Nous avons évalué l'approche d'apprentissage d'alignement local à l'aide de diverses expériences basées sur des jeux de données d'OAEI 2018. Nous avons déduit qu'il est avantageux de diviser une grande tâche d'alignement d'ontologies en un ensemble de tâches d'alignement locaux. L'espace de recherche est réduit, ce qui réduit le nombre de faux négatifs et de faux positifs. L'application de techniques de sélection de caractéristiques à chaque classificateur local augmente la valeur de rappel pour chaque tâche d'alignement local.Although a considerable body of research work has addressed the problem of ontology matching, few studies have tackled the large ontologies used in the biomedical domain. We introduce a fully automated local matching learning approach that breaks down a large ontology matching task into a set of independent local sub-matching tasks. This approach integrates a novel partitioning algorithm as well as a set of matching learning techniques. The partitioning method is based on hierarchical clustering and does not generate isolated partitions. The matching learning approach employs different techniques: (i) local matching tasks are independently and automatically aligned using their local classifiers, which are based on local training sets built from element level and structure level features, (ii) resampling techniques are used to balance each local training set, and (iii) feature selection techniques are used to automatically select the appropriate tuning parameters for each local matching context. Our local matching learning approach generates a set of combined alignments from each local matching task, and experiments show that a multiple local classifier approach outperforms conventional, state-of-the-art approaches: these use a single classifier for the whole ontology matching task. In addition, focusing on context-aware local training sets based on local feature selection and resampling techniques significantly enhances the obtained results

Génération automatique d'alignements complexes d'ontologies

Le web de données liées (LOD) est composé de nombreux entrepôts de données. Ces données sont décrites par différents vocabulaires (ou ontologies). Chaque ontologie a une terminologie et une modélisation propre ce qui les rend hétérogènes. Pour lier et rendre les données du web de données liées interopérables, les alignements d'ontologies établissent des correspondances entre les entités desdites ontologies. Il existe de nombreux systèmes d'alignement qui génèrent des correspondances simples, i.e., ils lient une entité à une autre entité. Toutefois, pour surmonter l'hétérogénéité des ontologies, des correspondances plus expressives sont parfois nécessaires. Trouver ce genre de correspondances est un travail fastidieux qu'il convient d'automatiser. Dans le cadre de cette thèse, une approche d'alignement complexe basée sur des besoins utilisateurs et des instances communes est proposée. Le domaine des alignements complexes est relativement récent et peu de travaux adressent la problématique de leur évaluation. Pour pallier ce manque, un système d'évaluation automatique basé sur de la comparaison d'instances est proposé. Ce système est complété par un jeu de données artificiel sur le domaine des conférences.The Linked Open Data (LOD) cloud is composed of data repositories. The data in the repositories are described by vocabularies also called ontologies. Each ontology has its own terminology and model. This leads to heterogeneity between them. To make the ontologies and the data they describe interoperable, ontology alignments establish correspondences, or links between their entities. There are many ontology matching systems which generate simple alignments, i.e., they link an entity to another. However, to overcome the ontology heterogeneity, more expressive correspondences are sometimes needed. Finding this kind of correspondence is a fastidious task that can be automated. In this thesis, an automatic complex matching approach based on a user's knowledge needs and common instances is proposed. The complex alignment field is still growing and little work address the evaluation of such alignments. To palliate this lack, we propose an automatic complex alignment evaluation system. This system is based on instances. A famous alignment evaluation dataset has been extended for this evaluation