Compact Labelings For Efficient First-Order Model-Checking

We consider graph properties that can be checked from labels, i.e., bit sequences, of logarithmic length attached to vertices. We prove that there exists such a labeling for checking a first-order formula with free set variables in the graphs of every class that is \emph{nicely locally cwd-decomposable}. This notion generalizes that of a \emph{nicely locally tree-decomposable} class. The graphs of such classes can be covered by graphs of bounded \emph{clique-width} with limited overlaps. We also consider such labelings for \emph{bounded} first-order formulas on graph classes of \emph{bounded expansion}. Some of these results are extended to counting queries

On tree decomposability of Henneberg graphs

In this work we describe an algorithm that generates well constrained geometric constraint graphs which are solvable by the tree-decomposition constructive technique. The algorithm is based on Henneberg constructions and would be of help in transforming underconstrained problems into well constrained problems as well as in exploring alternative constructions over a given set of geometric elements.Postprint (published version

Decomposable Principal Component Analysis

We consider principal component analysis (PCA) in decomposable Gaussian graphical models. We exploit the prior information in these models in order to distribute its computation. For this purpose, we reformulate the problem in the sparse inverse covariance (concentration) domain and solve the global eigenvalue problem using a sequence of local eigenvalue problems in each of the cliques of the decomposable graph. We demonstrate the application of our methodology in the context of decentralized anomaly detection in the Abilene backbone network. Based on the topology of the network, we propose an approximate statistical graphical model and distribute the computation of PCA

A closed-form approach to Bayesian inference in tree-structured graphical models

We consider the inference of the structure of an undirected graphical model in an exact Bayesian framework. More specifically we aim at achieving the inference with close-form posteriors, avoiding any sampling step. This task would be intractable without any restriction on the considered graphs, so we limit our exploration to mixtures of spanning trees. We consider the inference of the structure of an undirected graphical model in a Bayesian framework. To avoid convergence issues and highly demanding Monte Carlo sampling, we focus on exact inference. More specifically we aim at achieving the inference with close-form posteriors, avoiding any sampling step. To this aim, we restrict the set of considered graphs to mixtures of spanning trees. We investigate under which conditions on the priors - on both tree structures and parameters - exact Bayesian inference can be achieved. Under these conditions, we derive a fast an exact algorithm to compute the posterior probability for an edge to belong to {the tree model} using an algebraic result called the Matrix-Tree theorem. We show that the assumption we have made does not prevent our approach to perform well on synthetic and flow cytometry data

Spanning trees short or small

We study the problem of finding small trees. Classical network design problems are considered with the additional constraint that only a specified number $k$ of nodes are required to be connected in the solution. A prototypical example is the $k$MST problem in which we require a tree of minimum weight spanning at least $k$ nodes in an edge-weighted graph. We show that the $k$MST problem is NP-hard even for points in the Euclidean plane. We provide approximation algorithms with performance ratio $2\sqrt{k}$ for the general edge-weighted case and $O(k^{1/4})$ for the case of points in the plane. Polynomial-time exact solutions are also presented for the class of decomposable graphs which includes trees, series-parallel graphs, and bounded bandwidth graphs, and for points on the boundary of a convex region in the Euclidean plane. We also investigate the problem of finding short trees, and more generally, that of finding networks with minimum diameter. A simple technique is used to provide a polynomial-time solution for finding $k$-trees of minimum diameter. We identify easy and hard problems arising in finding short networks using a framework due to T. C. Hu.Comment: 27 page

Computational Complexity of the Interleaving Distance

The interleaving distance is arguably the most prominent distance measure in topological data analysis. In this paper, we provide bounds on the computational complexity of determining the interleaving distance in several settings. We show that the interleaving distance is NP-hard to compute for persistence modules valued in the category of vector spaces. In the specific setting of multidimensional persistent homology we show that the problem is at least as hard as a matrix invertibility problem. Furthermore, this allows us to conclude that the interleaving distance of interval decomposable modules depends on the characteristic of the field. Persistence modules valued in the category of sets are also studied. As a corollary, we obtain that the isomorphism problem for Reeb graphs is graph isomorphism complete.Comment: Discussion related to the characteristic of the field added. Paper accepted to the 34th International Symposium on Computational Geometr